Merge pull request #12 from CellTrackingChallenge/AOGM_intermediate_measures

Added intermediate Measures from TRA (AOGM etc.) to the output. (Sugg…

Author: TimoK93

ctc_metrics/metrics/technical/tra.py

@@ -44,5 +44,5 @@ def tra(
     AOGM_0 = w_fn * num_vertices + w_ea * num_edges
     # Calculate DET
     TRA = 1 - min(AOGM, AOGM_0) / AOGM_0
-    return float(TRA)
+    return float(TRA), AOGM, AOGM_0
 

ctc_metrics/scripts/evaluate.py

@@ -198,7 +198,12 @@ def calculate_metrics(
         results["SEG"] = seg(segm["labels_ref"], segm["ious"])
 
     if "TRA" in metrics:
-        results["TRA"] = tra(**graph_operations)
+        _tra, _aogm, _aogm0 = tra(**graph_operations)
+        results["TRA"] = _tra
+        results["AOGM"] = _aogm
+        results["AOGM_0"] = _aogm0
+        for key in ["NS", "FN", "FP", "ED", "EA", "EC"]:
+            results[f"AOGM_{key}"] = graph_operations[key]
 
     if "LNK" in metrics:
         results["LNK"] = lnk(**graph_operations)
@@ -265,7 +270,6 @@ def calculate_metrics(
         results.update(faf(
             traj["labels_comp_merged"], traj["mapped_comp_merged"]))
 
-
     return results