From 1faa36dc44e1d8ba64cb17ca77973d3a4d10d49a Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Fri, 4 Apr 2025 15:10:18 +0100 Subject: [PATCH 01/34] Converted to use uv and hatch over venv and tox --- .devcontainer/devcontainer.json | 4 +- .../actions/install_requirements/action.yml | 23 +++--- .github/workflows/_hatch.yml | 27 +++++++ .github/workflows/_release.yml | 2 +- .github/workflows/_test.yml | 2 +- .github/workflows/ci.yml | 36 ++++++---- .pre-commit-config.yaml | 16 ++++- Dockerfile | 17 +++-- pyproject.toml | 70 +++++++++++++------ 9 files changed, 144 insertions(+), 53 deletions(-) create mode 100644 .github/workflows/_hatch.yml diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index fce9dd59..7c480772 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -41,6 +41,6 @@ ], // Mount the parent as /workspaces so we can pip install peers as editable "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", - // After the container is created, install the python project in editable form - "postCreateCommand": "pip install $([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e '.[dev]' && pre-commit install" + // After the container is created, install the uv env + "postCreateCommand": "uv pip install $([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e '.[dev]' && pre-commit install" } diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml index d33e0805..998e2acb 100644 --- a/.github/actions/install_requirements/action.yml +++ b/.github/actions/install_requirements/action.yml @@ -4,9 +4,6 @@ inputs: python-version: description: Python version to install, default is from Dockerfile default: "dev" - pip-install: - description: Parameters to pass to pip install - default: "$([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e .[dev]" runs: using: composite @@ -20,15 +17,25 @@ runs: echo "PYTHON_VERSION=$PYTHON_VERSION" >> "$GITHUB_ENV" shell: bash - - name: Setup python - uses: actions/setup-python@v5 + - name: Install uv and set the python version + uses: astral-sh/setup-uv@v5 with: python-version: ${{ env.PYTHON_VERSION }} + enable-cache: true + cache-dependency-glob: "uv.lock" - - name: Install packages - run: pip install ${{ inputs.pip-install }} + - name: Install dependencies + run: uv sync shell: bash - name: Report what was installed - run: pip freeze + run: uv pip list + shell: bash + + - name: Add venv path to Github environment + run: echo "VENV_PATH=.venv" >> $GITHUB_ENV + shell: bash + + - name: Add venv path to Github Path + run: echo "${{ env.VENV_PATH }}/bin:$PATH" >> $GITHUB_PATH shell: bash diff --git a/.github/workflows/_hatch.yml b/.github/workflows/_hatch.yml new file mode 100644 index 00000000..e46c5758 --- /dev/null +++ b/.github/workflows/_hatch.yml @@ -0,0 +1,27 @@ +on: + workflow_call: + inputs: + hatch: + type: string + description: What to run under hatch + required: true + + +jobs: + run: + runs-on: "ubuntu-latest" + + steps: + - name: Checkout + uses: actions/checkout@v4 + + - name: Install python packages + uses: ./.github/actions/install_requirements + + - name: Run hatch + run: | + IFS=',' read -ra SCRIPTS <<< "${{ inputs.hatch }}" + for script in "${SCRIPTS[@]}"; do + echo "Running $script" + hatch run $script + done diff --git a/.github/workflows/_release.yml b/.github/workflows/_release.yml index c7716829..517bcf8e 100644 --- a/.github/workflows/_release.yml +++ b/.github/workflows/_release.yml @@ -23,7 +23,7 @@ jobs: - name: Create GitHub Release # We pin to the SHA, not the tag, for security reasons. # https://docs.github.com/en/actions/learn-github-actions/security-hardening-for-github-actions#using-third-party-actions - uses: softprops/action-gh-release@7b4da11513bf3f43f9999e90eabced41ab8bb048 # v2.2.0 + uses: softprops/action-gh-release@c95fe1489396fe8a9eb87c0abf8aa5b2ef267fda # v2.2.1 with: prerelease: ${{ contains(github.ref_name, 'a') || contains(github.ref_name, 'b') || contains(github.ref_name, 'rc') }} files: "*" diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index 552b29d0..a3c535cd 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -51,7 +51,7 @@ jobs: pip-install: ".[dev]" - name: Run tests - run: tox -e tests + run: hatch run tests - name: Upload coverage to Codecov uses: codecov/codecov-action@v5 diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index f198a244..a31c5c7c 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -11,37 +11,45 @@ jobs: lint: needs: check if: needs.check.outputs.branch-pr == '' - uses: ./.github/workflows/_tox.yml + uses: ./.github/workflows/_hatch.yml with: - tox: pre-commit + hatch: precommit,type-check test: needs: check if: needs.check.outputs.branch-pr == '' + strategy: + matrix: + runs-on: ["ubuntu-latest"] # can add windows-latest, macos-latest + python-version: ["3.11"] + include: + # Include one that runs in the dev environment + - runs-on: "ubuntu-latest" + python-version: "dev" + fail-fast: false uses: ./.github/workflows/_test.yml with: - python-version: dev - runs-on: ubuntu-latest + runs-on: ${{ matrix.runs-on }} + python-version: ${{ matrix.python-version }} secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} - docs: + container: needs: check if: needs.check.outputs.branch-pr == '' - uses: ./.github/workflows/_docs.yml + uses: ./.github/workflows/_container.yml permissions: - contents: write + contents: read + packages: write - example: - needs: test - if: github.ref_name == 'main' - uses: ./.github/workflows/_example.yml - secrets: - EXAMPLE_DEPLOY_KEY: ${{ secrets.EXAMPLE_DEPLOY_KEY }} + dist: + needs: check + if: needs.check.outputs.branch-pr == '' + uses: ./.github/workflows/_dist.yml release: if: github.ref_type == 'tag' - needs: docs + needs: [dist] uses: ./.github/workflows/_release.yml permissions: contents: write diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b5d4d7fa..6236246e 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -1,21 +1,31 @@ repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: v4.5.0 + rev: v5.0.0 hooks: - id: check-added-large-files - id: check-yaml - id: check-merge-conflict - id: end-of-file-fixer - - repo: local + - repo: https://github.com/astral-sh/uv-pre-commit + # uv version. + rev: 0.6.3 hooks: + - id: uv-lock + + - repo: https://github.com/astral-sh/ruff-pre-commit + # Ruff version. + rev: v0.9.6 + hooks: + # Run the linter. - id: ruff name: lint with ruff language: system - entry: ruff check --force-exclude --fix + entry: ruff check --force-exclude types: [python] require_serial: true + # Run the formatter. - id: ruff-format name: format with ruff language: system diff --git a/Dockerfile b/Dockerfile index 35d2abf7..bd5fdb40 100644 --- a/Dockerfile +++ b/Dockerfile @@ -5,9 +5,18 @@ FROM python:${PYTHON_VERSION} AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz \ + graphviz vim \ && rm -rf /var/lib/apt/lists/* +# Install uv using the official installer script +RUN curl -LsSf https://astral.sh/uv/install.sh | \ + env UV_INSTALL_DIR="/usr/local/bin" sh -# Set up a virtual environment and put it in PATH -RUN python -m venv /venv -ENV PATH=/venv/bin:$PATH +# Configure environment +ENV UV_CHECK_UPDATE=false +# Configure UV to use system Python +# ENV UV_SYSTEM_PYTHON=1 + +# Creates virtual environment +RUN uv venv --seed venv +ENV VIRTUAL_ENV=/venv +ENV PATH=$VIRTUAL_ENV/bin:$PATH diff --git a/pyproject.toml b/pyproject.toml index b0ab7390..14791bbb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -19,9 +19,12 @@ dev = [ "sphinx-copybutton", "sphinx-design", "tox", - "tox-direct", ] +# # Without this, setuptools apparently try to scan the whole image's filesystem while working in / +# [tool.setuptools.packages.find] +# where = [] + [tool.setuptools_scm] [tool.pytest.ini_options] @@ -32,27 +35,54 @@ addopts = """ # Doctest python code in docs, python code in src docstrings, test functions in tests testpaths = "tests" -# tox must currently be configured via an embedded ini string -# See: https://github.com/tox-dev/tox/issues/999 + [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist=True +skipsdist = true + +[tool.tox.env.pre-commit] +description = "Run pre-commit" +direct = true +allowlist_externals = ["pre-commit"] +commands = [ + [ + "pre-commit", + "run", + #"--all-files", + "--show-diff-on-failure", + "{posargs}", + ], +] -[testenv:{pre-commit,tests,docs}] -# Don't create a virtualenv for the command, requires tox-direct plugin -direct = True -passenv = * -allowlist_externals = - pre-commit - pytest - sphinx-build - sphinx-autobuild -commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - tests: pytest {posargs} - docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -""" +[tool.tox.env.tests] +description = "Run tests" +direct = true +allowlist_externals = ["pytest"] +commands = [ + [ + "pytest", + "--cov=phoebus_guibuilder", + "--cov-report", + "term", + "--cov-report", + "xml:cov.xml", + "{posargs}", + ], +] + +[tool.tox.env.docs] +description = "Run docs" +direct = true +allowlist_externals = ["sphinx-build", "sphinx-autobuild"] +commands = [ + [ + "sphinx-{posargs:build}", + "-EW", + "--keep-going", + "-T", + "docs", + "build/html", + ], +] [tool.ruff] src = ["src", "tests"] From 4f3290c41c23648d16fcc9a47551c75f6ff50304 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Wed, 9 Apr 2025 15:54:10 +0000 Subject: [PATCH 02/34] Replace tox with tox-uv; Remove hatch.yml --- .github/workflows/_hatch.yml | 27 --------------------------- .github/workflows/ci.yml | 4 ++-- pyproject.toml | 2 +- 3 files changed, 3 insertions(+), 30 deletions(-) delete mode 100644 .github/workflows/_hatch.yml diff --git a/.github/workflows/_hatch.yml b/.github/workflows/_hatch.yml deleted file mode 100644 index e46c5758..00000000 --- a/.github/workflows/_hatch.yml +++ /dev/null @@ -1,27 +0,0 @@ -on: - workflow_call: - inputs: - hatch: - type: string - description: What to run under hatch - required: true - - -jobs: - run: - runs-on: "ubuntu-latest" - - steps: - - name: Checkout - uses: actions/checkout@v4 - - - name: Install python packages - uses: ./.github/actions/install_requirements - - - name: Run hatch - run: | - IFS=',' read -ra SCRIPTS <<< "${{ inputs.hatch }}" - for script in "${SCRIPTS[@]}"; do - echo "Running $script" - hatch run $script - done diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index a31c5c7c..56036b42 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -11,9 +11,9 @@ jobs: lint: needs: check if: needs.check.outputs.branch-pr == '' - uses: ./.github/workflows/_hatch.yml + uses: ./.github/workflows/_tox.yml with: - hatch: precommit,type-check + tox: precommit,type-check test: needs: check diff --git a/pyproject.toml b/pyproject.toml index 14791bbb..509c8ccf 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,7 +18,7 @@ dev = [ "sphinx-autobuild", "sphinx-copybutton", "sphinx-design", - "tox", + "tox-uv", ] # # Without this, setuptools apparently try to scan the whole image's filesystem while working in / From e67dd5aab00b3fb8f3c5d53180c1a865343c6252 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 10 Apr 2025 08:14:11 +0000 Subject: [PATCH 03/34] Fix CI when building env --- .../actions/install_requirements/action.yml | 2 +- .github/workflows/ci.yml | 2 +- uv.lock | 1344 +++++++++++++++++ 3 files changed, 1346 insertions(+), 2 deletions(-) create mode 100644 uv.lock diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml index 998e2acb..b14850d5 100644 --- 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08:31:44 +0000 Subject: [PATCH 04/34] Remove hatch run from _test.yml; Bump pre-commit hook versions --- .github/workflows/_test.yml | 2 +- .pre-commit-config.yaml | 4 ++-- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index a3c535cd..552b29d0 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -51,7 +51,7 @@ jobs: pip-install: ".[dev]" - name: Run tests - run: hatch run tests + run: tox -e tests - name: Upload coverage to Codecov uses: codecov/codecov-action@v5 diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 6236246e..3c6856c8 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,13 +9,13 @@ repos: - repo: https://github.com/astral-sh/uv-pre-commit # uv version. - rev: 0.6.3 + rev: 0.6.14 hooks: - id: uv-lock - repo: https://github.com/astral-sh/ruff-pre-commit # Ruff version. - rev: v0.9.6 + rev: v0.11.4 hooks: # Run the linter. - id: ruff From 4aecf1133ec295f4db47c1352c4d1a0d127275fd Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 10 Apr 2025 08:42:27 +0000 Subject: [PATCH 05/34] Fix pytest runner --- pyproject.toml | 12 +----------- 1 file changed, 1 insertion(+), 11 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index 509c8ccf..a22672ac 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -57,17 +57,7 @@ commands = [ description = "Run tests" direct = true allowlist_externals = ["pytest"] -commands = [ - [ - "pytest", - "--cov=phoebus_guibuilder", - "--cov-report", - "term", - "--cov-report", - "xml:cov.xml", - "{posargs}", - ], -] +commands = [["pytest", "{posargs}"]] [tool.tox.env.docs] description = "Run docs" From 540364679b33b455ae7eda4b1d19b11b6af2ab19 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 10 Apr 2025 08:46:26 +0000 Subject: [PATCH 06/34] Update template files for uv --- template/Dockerfile.jinja | 24 ++++++++--- template/pyproject.toml.jinja | 78 ++++++++++++++++++++++++----------- 2 files changed, 72 insertions(+), 30 deletions(-) diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index c5ca109b..f969b8cb 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -5,24 +5,36 @@ FROM python:${PYTHON_VERSION} AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz \ + graphviz vim \ && rm -rf /var/lib/apt/lists/* +# Install uv using the official installer script +RUN curl -LsSf https://astral.sh/uv/install.sh | \ + env UV_INSTALL_DIR="/usr/local/bin" sh -# Set up a virtual environment and put it in PATH -RUN python -m venv /venv -ENV PATH=/venv/bin:$PATH{% if docker %} +# Configure environment +ENV UV_CHECK_UPDATE=false +# Configure UV to use system Python +# ENV UV_SYSTEM_PYTHON=1 + +# Creates virtual environment +RUN uv venv --seed venv +ENV VIRTUAL_ENV=/venv +ENV PATH=$VIRTUAL_ENV/bin:$PATH{% if docker %} # The build stage installs the context into the venv FROM developer AS build COPY . /context WORKDIR /context -RUN touch dev-requirements.txt && pip install -c dev-requirements.txt . + +# install dependencies and project into the local packages directory +RUN touch dev-requirements.txt && uv pip install -c dev-requirements.txt . # The runtime stage copies the built venv into a slim runtime container FROM python:${PYTHON_VERSION}-slim AS runtime # Add apt-get system dependecies for runtime here if needed COPY --from=build /venv/ /venv/ -ENV PATH=/venv/bin:$PATH +ENV VIRTUAL_ENV=/venv +ENV PATH=$VIRTUAL_ENV/bin:$PATH # change this entrypoint if it is not the same as the repo ENTRYPOINT ["{{ repo_name }}"] diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index 2155ca29..d12641f6 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -26,14 +26,14 @@ dev = [ {% endif %}"pipdeptree", "pre-commit", {% if sphinx %}"pydata-sphinx-theme>=0.12", - {% endif %}{% if type_checker=="pyright" %}"pyright", - {% endif %}"pytest", + {% endif %} {% if type_checker=="pyright" %}"pyright", + {% endif %}"pytest>8.3.4", "pytest-cov", "ruff", {% if sphinx %}"sphinx-autobuild", "sphinx-copybutton", "sphinx-design", - {% endif %}"tox-direct", + {% endif %}"tox-uv", "types-mock", ] @@ -77,30 +77,60 @@ data_file = "/tmp/{{ package_name }}.coverage" # Tests are run from installed location, map back to the src directory source = ["src", "**/site-packages/"] -# tox must currently be configured via an embedded ini string -# See: https://github.com/tox-dev/tox/issues/999 [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist=True +skipsdist = true -[testenv:{pre-commit,type-checking,tests{% if sphinx %},docs{% endif %}}] -# Don't create a virtualenv for the command, requires tox-direct plugin -direct = True -passenv = * -allowlist_externals = - pytest - pre-commit - {{ type_checker }} -{% if sphinx %} sphinx-build - sphinx-autobuild -{% endif %}commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - type-checking: {{ type_checker }} src tests {posargs} - tests: pytest --cov={{ package_name }} --cov-report term --cov-report xml:cov.xml {posargs} -{% if sphinx %} docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -{% endif %}""" +[tool.tox.env.pre-commit] +description = "Run pre-commit" +direct = true +allowlist_externals = ["pre-commit"] +commands = [ + [ + "pre-commit", + "run", + #"--all-files", + "--show-diff-on-failure", + "{posargs}", + ], +] + +[tool.tox.env.type-checking] +description = "Run type-checking" +direct = true +allowlist_externals = ["{{ type_checker }}"] +commands = [["{{ type_checker }}", "src", "{posargs}"]] + +[tool.tox.env.tests] +description = "Run tests" +direct = true +allowlist_externals = ["pytest"] +commands = [ + [ + "pytest", + "--cov={{ package_name}}", + "--cov-report", + "term", + "--cov-report", + "xml:cov.xml", + "{posargs}", + ], +] +{% if sphinx %}[tool.tox.env.docs] +description = "Run docs" +direct = true +allowlist_externals = ["sphinx-build", "sphinx-autobuild"] +commands = [ + [ + "sphinx-{posargs:build}", + "-EW", + "--keep-going", + "-T", + "docs", + "build/html", + ], +] +{% endif %} [tool.ruff] src = ["src", "tests"] line-length = 88 From be8066a49ee939b169726bfdde253eb18d8532f5 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 10 Apr 2025 09:38:07 +0000 Subject: [PATCH 07/34] Tidy pyproject.toml --- pyproject.toml | 6 ++---- 1 file changed, 2 insertions(+), 4 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index a22672ac..7188eb1a 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,9 +6,7 @@ build-backend = "setuptools.build_meta" name = "python-copier-template" dynamic = ["version"] requires-python = ">=3.11" - -[project.optional-dependencies] -dev = [ +optional-dependencies = { dev = [ "copier", "myst-parser", "pre-commit", @@ -19,7 +17,7 @@ dev = [ "sphinx-copybutton", "sphinx-design", "tox-uv", -] +] } # # Without this, setuptools apparently try to scan the whole image's filesystem while working in / # [tool.setuptools.packages.find] From 70015dfb5be1542d7e70f84f3f2fd533b06693f6 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Mon, 14 Apr 2025 07:58:15 +0000 Subject: [PATCH 08/34] Revert unintended ci.yml changes --- .github/workflows/ci.yml | 19 ++++++++++--------- 1 file changed, 10 insertions(+), 9 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index dd8e4250..6ac1c4da 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -34,22 +34,23 @@ jobs: secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} - container: + docs: needs: check if: needs.check.outputs.branch-pr == '' - uses: ./.github/workflows/_container.yml + uses: ./.github/workflows/_docs.yml permissions: - contents: read - packages: write + contents: write - dist: - needs: check - if: needs.check.outputs.branch-pr == '' - uses: ./.github/workflows/_dist.yml + example: + needs: test + if: github.ref_name == 'main' + uses: ./.github/workflows/_example.yml + secrets: + EXAMPLE_DEPLOY_KEY: ${{ secrets.EXAMPLE_DEPLOY_KEY }} release: if: github.ref_type == 'tag' - needs: [dist] + needs: docs uses: ./.github/workflows/_release.yml permissions: contents: write From 7ff792cc56ecea871b92564218f67788adb641e3 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Wed, 23 Apr 2025 09:31:00 +0000 Subject: [PATCH 09/34] Fix actions build, and updates to pyproject.toml --- .../actions/install_requirements/action.yml | 7 +- .github/workflows/_test.yml | 2 +- .pre-commit-config.yaml | 2 +- pyproject.toml | 20 +- uv.lock | 433 +++++++++++++++--- 5 files changed, 400 insertions(+), 64 deletions(-) diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml index b14850d5..21faff5c 100644 --- a/.github/actions/install_requirements/action.yml +++ b/.github/actions/install_requirements/action.yml @@ -4,6 +4,9 @@ inputs: python-version: description: Python version to install, default is from Dockerfile default: "dev" + pip-install: + description: Parameters to pass to uv pip install + default: "$([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e .[dev]" runs: using: composite @@ -24,8 +27,8 @@ runs: enable-cache: true cache-dependency-glob: "uv.lock" - - name: Install dependencies - run: uv sync --extra dev + - name: Install packages + run: uv pip install ${{ inputs.pip-install }} shell: bash - name: Report what was installed diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index 552b29d0..977f161f 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -34,7 +34,7 @@ jobs: - if: inputs.python-version == 'dev' name: Write the requirements as an artifact - run: pip freeze --exclude-editable > /tmp/dev-requirements.txt + run: uv pip freeze --exclude-editable > /tmp/dev-requirements.txt - if: inputs.python-version == 'dev' name: Upload dev-requirements.txt diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 3c6856c8..39abe952 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -21,7 +21,7 @@ repos: - id: ruff name: lint with ruff language: system - entry: ruff check --force-exclude + entry: ruff check --force-exclude --fix types: [python] require_serial: true diff --git a/pyproject.toml b/pyproject.toml index 7188eb1a..85b53d5e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -17,6 +17,7 @@ optional-dependencies = { dev = [ "sphinx-copybutton", "sphinx-design", "tox-uv", + "twine>=6.1.0", ] } # # Without this, setuptools apparently try to scan the whole image's filesystem while working in / @@ -36,10 +37,17 @@ testpaths = "tests" [tool.tox] skipsdist = true +requires = ["tox-uv>=1.25.0"] +# envs to runs automatically with tox -p +env_list = ["pre-commit", "tests", 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12 deletions(-) diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index d12641f6..da084375 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -20,13 +20,14 @@ requires-python = ">=3.11" [project.optional-dependencies] dev = [ + "build", "copier", {% if type_checker=="mypy" %}"mypy", {% endif %}{% if sphinx %}"myst-parser", {% endif %}"pipdeptree", "pre-commit", {% if sphinx %}"pydata-sphinx-theme>=0.12", - {% endif %} {% if type_checker=="pyright" %}"pyright", + {% endif %}{% if type_checker=="pyright" %}"pyright", {% endif %}"pytest>8.3.4", "pytest-cov", "ruff", @@ -34,6 +35,7 @@ dev = [ "sphinx-copybutton", "sphinx-design", {% endif %}"tox-uv", + "twine", "types-mock", ] @@ -79,10 +81,17 @@ source = ["src", "**/site-packages/"] [tool.tox] skipsdist = true +requires = ["tox-uv>=1.25.0"] +# envs to runs automatically with tox -p +env_list = ["pre-commit", "type-checking", "docs"] # "tests"] + +[tool.tox.env] +passenv = { "*" = "" } +# Include setuptools, pip, ... in the tox envs +uv_seed = { enabled = true } [tool.tox.env.pre-commit] description = "Run pre-commit" -direct = true allowlist_externals = ["pre-commit"] commands = [ [ @@ -90,44 +99,55 @@ commands = [ "run", #"--all-files", "--show-diff-on-failure", - "{posargs}", + { replace = "posargs", default = [], extend = true }, ], ] [tool.tox.env.type-checking] description = "Run type-checking" -direct = true allowlist_externals = ["{{ type_checker }}"] -commands = [["{{ type_checker }}", "src", "{posargs}"]] +# needed otherwise throws reportUnknownMemberType errors +deps = ["pytest"] +commands = [ + [ + "{{ type_checker }}", + "src", + "tests", + { replace = "posargs", default = [ + ], extend = true }, + ], +] [tool.tox.env.tests] description = "Run tests" -direct = true allowlist_externals = ["pytest"] commands = [ [ "pytest", - "--cov={{ package_name}}", + "-vv", + "--cov={{ package_name }}", "--cov-report", "term", "--cov-report", "xml:cov.xml", - "{posargs}", + { replace = "posargs", default = [ + ], extend = true }, ], ] {% if sphinx %}[tool.tox.env.docs] description = "Run docs" -direct = true allowlist_externals = ["sphinx-build", "sphinx-autobuild"] commands = [ [ - "sphinx-{posargs:build}", - "-EW", - "--keep-going", + "sphinx-build", "-T", "docs", "build/html", + { replace = "posargs", default = [ + "-EW", + "--keep-going", + ], extend = true }, ], ] {% endif %} From c71bdfb2d2d39f6d9c9678ec9333e8cb7a4aacca Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Wed, 30 Apr 2025 10:36:59 +0000 Subject: [PATCH 11/34] Fixes to dev container and tests (but some test cases fail, e.g. running test_template_mypy --- __init__.py | 0 template/Dockerfile.jinja | 4 ++-- template/pyproject.toml.jinja | 4 ++++ tests/test_example.py | 28 +++++++++++++++------------- 4 files changed, 21 insertions(+), 15 deletions(-) create mode 100644 __init__.py diff --git a/__init__.py b/__init__.py new file mode 100644 index 00000000..e69de29b diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index f969b8cb..46e6f8ca 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -32,8 +32,8 @@ RUN touch dev-requirements.txt && uv pip install -c dev-requirements.txt . # The runtime stage copies the built venv into a slim runtime container FROM python:${PYTHON_VERSION}-slim AS runtime # Add apt-get system dependecies for runtime here if needed -COPY --from=build /venv/ /venv/ -ENV VIRTUAL_ENV=/venv +COPY --from=build /venv/ .venv/ +ENV VIRTUAL_ENV=./.venv ENV PATH=$VIRTUAL_ENV/bin:$PATH # change this entrypoint if it is not the same as the repo diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index da084375..dae3a378 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -49,6 +49,8 @@ GitHub = "{{ repo_url }}" email = "{{ author_email }}" name = "{{ author_name }}" +[tool.uv] +default-groups = [] [tool.setuptools_scm] version_file = "src/{{ package_name }}/_version.py" @@ -61,6 +63,8 @@ typeCheckingMode = "standard" {% endif %}{% if type_checker=="mypy" %} [tool.mypy] ignore_missing_imports = true # Ignore missing stubs in imported modules +explicit_package_bases = true +#no_namespace_packages = true {% endif %} [tool.pytest.ini_options] # Run pytest with all our checkers, and don't spam us with massive tracebacks on error diff --git a/tests/test_example.py b/tests/test_example.py index a8c0f9ac..a54be57c 100644 --- a/tests/test_example.py +++ b/tests/test_example.py @@ -37,10 +37,12 @@ def run_pipe(cmd: str, cwd=None): def make_venv(project_path: Path) -> callable: - venv_path = project_path / "venv" - run_pipe(f"python -m venv {venv_path}") + venv_path = project_path / ".venv" + run_pipe(f"uv venv {venv_path}") run = functools.partial(run_pipe, cwd=str(project_path)) - run("./venv/bin/pip install -e .[dev]") + # install to this env (hence the -p) + run(f"uv pip install -e .[dev] -p {venv_path}/bin/python") + # run("ls -la .venv/bin >&2") return run @@ -53,14 +55,14 @@ def test_template_defaults(tmp_path: Path): catalog_info = tmp_path / "catalog-info.yaml" assert catalog_info.exists() assert 'typeCheckingMode = "strict"' in pyproject_toml.read_text() - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") if not run_pipe("git tag --points-at HEAD"): # Only run linkcheck if not on a tag, as the CI might not have pushed # the docs for this tag yet, so we will fail - run("./venv/bin/tox -e docs build -- -b linkcheck") - run("./venv/bin/pip install build twine") - run("./venv/bin/python -m build") - run("./venv/bin/twine check --strict dist/*") + run(".venv/bin/tox -p -e docs -- -b linkcheck") + run(".venv/bin/uv pip install build twine") + run(".venv/bin/python -m build") + run(".venv/bin/twine check --strict dist/*") def test_template_with_extra_code_and_api_docs(tmp_path: Path): @@ -100,7 +102,7 @@ class Thing: # Add to make sure pre-commit doesn't moan run("git add .") # Build - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") # Check it generates the right output api_dir = tmp_path / "build" / "html" / "_api" top_html = api_dir / "python_copier_template_example.html" @@ -121,13 +123,13 @@ class Thing: def test_template_mypy(tmp_path: Path): copy_project(tmp_path, type_checker="mypy") run = make_venv(tmp_path) - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") def test_template_no_docs(tmp_path: Path): copy_project(tmp_path, docs_type="README") run = make_venv(tmp_path) - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") def test_template_in_different_org_has_no_catalog(tmp_path: Path): @@ -141,7 +143,7 @@ def test_template_no_docker_has_no_docs_and_works(tmp_path: Path): container_doc = tmp_path / "docs" / "how-to" / "run-container.md" assert not container_doc.exists() run = make_venv(tmp_path) - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") def test_bad_repo_name(tmp_path: Path): @@ -232,7 +234,7 @@ def test_pyright_works_in_standard_typing_mode(tmp_path: Path): # Ensure pyright is still happy run = make_venv(tmp_path) - run(f"./venv/bin/pyright {tmp_path}") + run(f".venv/bin/pyright {tmp_path}") def test_ignores_mypy_strict_mode(tmp_path: Path): From 50defbcb9860f17ca4b2681f32db1536670ee97d Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Tue, 6 May 2025 08:32:32 +0000 Subject: [PATCH 12/34] Revert changes to ci.yml --- .github/workflows/ci.yml | 13 ++----------- 1 file changed, 2 insertions(+), 11 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 6ac1c4da..f198a244 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -18,19 +18,10 @@ jobs: test: needs: check if: needs.check.outputs.branch-pr == '' - strategy: - matrix: - runs-on: ["ubuntu-latest"] # can add windows-latest, macos-latest - python-version: ["3.11"] - include: - # Include one that runs in the dev environment - - runs-on: "ubuntu-latest" - python-version: "dev" - fail-fast: false uses: ./.github/workflows/_test.yml with: - runs-on: ${{ matrix.runs-on }} - python-version: ${{ matrix.python-version }} + python-version: dev + runs-on: ubuntu-latest secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} From 45c895aa92d0c504e3af71e190e079a010d7ce42 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Tue, 6 May 2025 13:57:06 +0000 Subject: [PATCH 13/34] Update pre-commit-config --- .pre-commit-config.yaml | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 39abe952..0e712089 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -9,13 +9,14 @@ repos: - repo: https://github.com/astral-sh/uv-pre-commit # uv version. - rev: 0.6.14 + rev: 0.7.2 hooks: - id: uv-lock + # Synchronize dependencies upon branch checkout, pull or rebase + # requires extra hook types to be installed!!! + # - id: uv-sync - - repo: https://github.com/astral-sh/ruff-pre-commit - # Ruff version. - rev: v0.11.4 + - repo: local hooks: # Run the linter. - id: ruff From 5bbb867ed318a060f05c029ccc0ea0c2b740586b Mon Sep 17 00:00:00 2001 From: Callum Forrester Date: Tue, 13 May 2025 11:33:01 +0000 Subject: [PATCH 14/34] Revert discussed changes and remove commented out parts --- Dockerfile | 7 +- pyproject.toml | 14 +- template/Dockerfile.jinja | 7 +- template/pyproject.toml.jinja | 2 - uv.lock | 1321 ++++++++++++++------------------- 5 files changed, 572 insertions(+), 779 deletions(-) diff --git a/Dockerfile b/Dockerfile index bd5fdb40..925cb47a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -5,18 +5,17 @@ FROM python:${PYTHON_VERSION} AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz vim \ + graphviz \ && rm -rf /var/lib/apt/lists/* + # Install uv using the official installer script RUN curl -LsSf https://astral.sh/uv/install.sh | \ env UV_INSTALL_DIR="/usr/local/bin" sh # Configure environment ENV UV_CHECK_UPDATE=false -# Configure UV to use system Python -# ENV UV_SYSTEM_PYTHON=1 -# Creates virtual environment +# Create virtual environment RUN uv venv --seed venv ENV VIRTUAL_ENV=/venv ENV PATH=$VIRTUAL_ENV/bin:$PATH diff --git a/pyproject.toml b/pyproject.toml index 85b53d5e..02cb9d72 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -6,7 +6,9 @@ build-backend = "setuptools.build_meta" name = "python-copier-template" dynamic = ["version"] requires-python = ">=3.11" -optional-dependencies = { dev = [ + +[project.optional-dependencies] +dev = [ "copier", "myst-parser", "pre-commit", @@ -18,11 +20,7 @@ optional-dependencies = { dev = [ "sphinx-design", "tox-uv", "twine>=6.1.0", -] } - -# # Without this, setuptools apparently try to scan the whole image's filesystem while working in / -# [tool.setuptools.packages.find] -# where = [] +] [tool.setuptools_scm] @@ -55,14 +53,14 @@ commands = [ "run", #"--all-files", "--show-diff-on-failure", - "{posargs}", + { replace = "posargs", default = [], extend = true }, ], ] [tool.tox.env.tests] description = "Run tests" allowlist_externals = ["pytest"] -commands = [["pytest", "{posargs}"]] +commands = [["pytest", { replace = "posargs", default = [], extend = true }]] [tool.tox.env.docs] description = "Run docs" diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 46e6f8ca..342c8dfd 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -5,18 +5,17 @@ FROM python:${PYTHON_VERSION} AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz vim \ + graphviz \ && rm -rf /var/lib/apt/lists/* + # Install uv using the official installer script RUN curl -LsSf https://astral.sh/uv/install.sh | \ env UV_INSTALL_DIR="/usr/local/bin" sh # Configure environment ENV UV_CHECK_UPDATE=false -# Configure UV to use system Python -# ENV UV_SYSTEM_PYTHON=1 -# Creates virtual environment +# Create virtual environment RUN uv venv 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diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 7c480772..5fb72b09 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -7,7 +7,8 @@ }, "remoteEnv": { // Allow X11 apps to run inside the container - "DISPLAY": "${localEnv:DISPLAY}" + "DISPLAY": "${localEnv:DISPLAY}", + "PATH": "${containerEnv:PATH}:/workspaces/${localWorkspaceFolderBasename}/.venv/bin" }, "customizations": { "vscode": { @@ -39,8 +40,14 @@ // Make sure SELinux does not disable with access to host filesystems like tmp "--security-opt=label=disable" ], + "mounts": [ + { + "target": "/workspaces/${localWorkspaceFolderBasename}/.venv", + "type": "volume" + } + ], // Mount the parent as /workspaces so we can pip install peers as editable "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", // After the container is created, install the uv env - "postCreateCommand": "uv pip install $([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e '.[dev]' && pre-commit install" + "postCreateCommand": "uv venv --seed && uv sync --locked && pre-commit install" } diff --git a/Dockerfile b/Dockerfile index 925cb47a..cf62416b 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,19 +3,9 @@ ARG PYTHON_VERSION=3.11 FROM python:${PYTHON_VERSION} AS developer -# Add any system dependencies for the developer/build environment here -RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz \ - && rm -rf /var/lib/apt/lists/* +# Use this version of uv +ARG UV_VERSION=0.7.4 -# Install uv using the official installer script -RUN curl -LsSf https://astral.sh/uv/install.sh | \ - env UV_INSTALL_DIR="/usr/local/bin" sh - -# Configure environment -ENV UV_CHECK_UPDATE=false - -# Create virtual environment -RUN uv venv --seed venv -ENV VIRTUAL_ENV=/venv -ENV PATH=$VIRTUAL_ENV/bin:$PATH +# Install uv using the official image +# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv +COPY --from=ghcr.io/astral-sh/uv:${UV_VERSION} /uv /uvx /bin/ diff --git a/pyproject.toml b/pyproject.toml index 02cb9d72..cdd063c6 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ name = "python-copier-template" dynamic = ["version"] requires-python = ">=3.11" -[project.optional-dependencies] +[dependency-groups] dev = [ "copier", "myst-parser", diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 342c8dfd..bb6e7d18 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -3,38 +3,47 @@ ARG PYTHON_VERSION=3.11 FROM python:${PYTHON_VERSION} AS developer -# Add any system dependencies for the developer/build environment here -RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz \ - && rm -rf /var/lib/apt/lists/* - -# Install uv using the official installer script -RUN curl -LsSf https://astral.sh/uv/install.sh | \ - env UV_INSTALL_DIR="/usr/local/bin" sh +# Use this version of uv +ARG UV_VERSION=0.7.4 -# Configure environment -ENV UV_CHECK_UPDATE=false +# Add any system dependencies for the developer/build environment here +# RUN apt-get update && apt-get install -y --no-install-recommends \ +# graphviz -# Create virtual environment -RUN uv venv --seed venv -ENV VIRTUAL_ENV=/venv -ENV PATH=$VIRTUAL_ENV/bin:$PATH{% if docker %} +# Install uv using the official image +# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv +COPY --from=ghcr.io/astral-sh/uv:${UV_VERSION} /uv /uvx /bin/ # The build stage installs the context into the venv FROM developer AS build COPY . /context WORKDIR /context -# install dependencies and project into the local packages directory -RUN touch dev-requirements.txt && uv pip install -c dev-requirements.txt . +# Enable bytecode compilation and copy from the cache instead of linking +# since it's a mounted volume +ENV UV_COMPILE_BYTECODE=1 +ENV UV_LINK_MODE=copy + +# Install the project's dependencies using the lockfile and settings +RUN --mount=type=cache,target=/root/.cache/uv \ + --mount=type=bind,source=uv.lock,target=uv.lock \ + --mount=type=bind,source=pyproject.toml,target=pyproject.toml \ + uv sync --locked --no-install-project --no-dev + +# Then, add the rest of the project source code and install it +# Installing separately from its dependencies allows optimal layer caching +COPY . /context +RUN --mount=type=cache,target=/root/.cache/uv \ + uv sync --locked --no-dev # The runtime stage copies the built venv into a slim runtime container FROM python:${PYTHON_VERSION}-slim AS runtime # Add apt-get system dependecies for runtime here if needed -COPY --from=build /venv/ .venv/ -ENV VIRTUAL_ENV=./.venv -ENV PATH=$VIRTUAL_ENV/bin:$PATH -# change this entrypoint if it is not the same as the repo +# We need to keep the venv at the same absolute path as in the build stage +COPY --from=build /context/venv/ /context/venv/ +ENV PATH=/context/venv/bin:$PATH + +# Change this entrypoint if it is not the same as the repo ENTRYPOINT ["{{ repo_name }}"] CMD ["--version"]{% endif %} diff --git a/uv.lock b/uv.lock index c8544357..3fd60c74 100644 --- a/uv.lock +++ b/uv.lock @@ -847,7 +847,7 @@ wheels = [ name = "python-copier-template" source = { editable = "." } -[package.optional-dependencies] +[package.dev-dependencies] dev = [ { name = "copier" }, { name = "myst-parser" }, @@ -863,20 +863,21 @@ dev = [ ] [package.metadata] -requires-dist = [ - { name = "copier", marker = "extra == 'dev'" }, - { name = "myst-parser", marker = "extra == 'dev'" }, - { name = "pre-commit", marker = "extra == 'dev'" }, - { name = "pydata-sphinx-theme", marker = "extra == 'dev'", specifier = ">=0.12" }, - { name = "pytest", marker = "extra == 'dev'" }, - { name = "ruff", marker = "extra == 'dev'" }, - { name = "sphinx-autobuild", marker = "extra == 'dev'" }, - { name = "sphinx-copybutton", marker = "extra == 'dev'" }, - { name = "sphinx-design", marker = "extra == 'dev'" }, - { name = "tox-uv", marker = "extra == 'dev'" }, - { name = "twine", marker = "extra == 'dev'", specifier = ">=6.1.0" }, -] -provides-extras = ["dev"] + +[package.metadata.requires-dev] +dev = [ + { name = "copier" }, + { name = "myst-parser" }, + { name = "pre-commit" }, + { name = "pydata-sphinx-theme", specifier = ">=0.12" }, + { name = "pytest" }, + { name = "ruff" }, + { name = "sphinx-autobuild" }, + { name = "sphinx-copybutton" }, + { name = "sphinx-design" }, + { name = "tox-uv" }, + { name = "twine", specifier = ">=6.1.0" }, +] [[package]] name = "pywin32" From 99fae798e614b278d3707e53943d949f2be7c3da Mon Sep 17 00:00:00 2001 From: Callum Forrester Date: Mon, 19 May 2025 16:37:16 +0000 Subject: [PATCH 16/34] Add config for using uv MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Add config for using uv to pyproject.toml and templated pyproject.toml, add uv lockfile. … Co-authored-by: Oliver Copping --- pyproject.toml | 69 +- template/pyproject.toml.jinja | 100 ++- tests/test_example.py | 33 +- uv.lock | 1471 +++++++++++++++++++++++++++++++++ 4 files changed, 1613 insertions(+), 60 deletions(-) create mode 100644 uv.lock diff --git a/pyproject.toml b/pyproject.toml index b0ab7390..7e38ec79 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -7,7 +7,7 @@ name = "python-copier-template" dynamic = ["version"] requires-python = ">=3.11" -[project.optional-dependencies] +[dependency-groups] dev = [ "copier", "myst-parser", @@ -18,8 +18,9 @@ dev = [ "sphinx-autobuild", "sphinx-copybutton", "sphinx-design", - "tox", - "tox-direct", + "tox-uv", + "twine>=6.1.0", + "uv~=0.7.0", ] [tool.setuptools_scm] @@ -32,27 +33,51 @@ addopts = """ # Doctest python code in docs, python code in src docstrings, test functions in tests testpaths = "tests" -# tox must currently be configured via an embedded ini string -# See: https://github.com/tox-dev/tox/issues/999 + [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist=True +skipsdist = true +requires = ["tox-uv>=1.25.0"] +# envs to runs automatically with tox -p +env_list = ["pre-commit", "tests", "docs"] + +[tool.tox.env] +passenv = { "*" = "" } +# Include setuptools, pip, ... in the tox envs +uv_seed = { enabled = true } + +[tool.tox.env.pre-commit] +description = "Run pre-commit" +allowlist_externals = ["pre-commit"] +commands = [ + [ + "pre-commit", + "run", + #"--all-files", + "--show-diff-on-failure", + { replace = "posargs", default = [], extend = true }, + ], +] + +[tool.tox.env.tests] +description = "Run tests" +allowlist_externals = ["pytest"] +commands = [["pytest", { replace = "posargs", default = [], extend = true }]] -[testenv:{pre-commit,tests,docs}] -# Don't create a virtualenv for the command, requires tox-direct plugin -direct = True -passenv = * -allowlist_externals = - pre-commit - pytest - sphinx-build - sphinx-autobuild -commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - tests: pytest {posargs} - docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -""" +[tool.tox.env.docs] +description = "Run docs" +allowlist_externals = ["sphinx-build", "sphinx-autobuild"] +commands = [ + [ + "sphinx-build", + "-T", + "docs", + "build/html", + { replace = "posargs", default = [ + "-EW", + "--keep-going", + ], extend = true }, + ], +] [tool.ruff] src = ["src", "tests"] diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index 2155ca29..387a87e5 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -18,8 +18,9 @@ license.file = "LICENSE" readme = "README.md" requires-python = ">=3.11" -[project.optional-dependencies] +[dependency-groups] dev = [ + "build", "copier", {% if type_checker=="mypy" %}"mypy", {% endif %}{% if sphinx %}"myst-parser", @@ -27,14 +28,16 @@ dev = [ "pre-commit", {% if sphinx %}"pydata-sphinx-theme>=0.12", {% endif %}{% if type_checker=="pyright" %}"pyright", - {% endif %}"pytest", + {% endif %}"pytest>8.3.4", "pytest-cov", "ruff", {% if sphinx %}"sphinx-autobuild", "sphinx-copybutton", "sphinx-design", - {% endif %}"tox-direct", + {% endif %}"tox-uv", + "twine", "types-mock", + "uv~=0.7.0", ] [project.scripts] @@ -47,7 +50,6 @@ GitHub = "{{ repo_url }}" email = "{{ author_email }}" name = "{{ author_name }}" - [tool.setuptools_scm] version_file = "src/{{ package_name }}/_version.py" {% if type_checker=="pyright" %} @@ -77,30 +79,78 @@ data_file = "/tmp/{{ package_name }}.coverage" # Tests are run from installed location, map back to the src directory source = ["src", "**/site-packages/"] -# tox must currently be configured via an embedded ini string -# See: https://github.com/tox-dev/tox/issues/999 [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist=True +skipsdist = true +requires = ["tox-uv>=1.25.0"] +# envs to runs automatically with tox -p +env_list = ["pre-commit", "type-checking", "docs"] # "tests"] + +[tool.tox.env] +passenv = { "*" = "" } +# Include setuptools, pip, ... in the tox envs +uv_seed = { enabled = true } -[testenv:{pre-commit,type-checking,tests{% if sphinx %},docs{% endif %}}] -# Don't create a virtualenv for the command, requires tox-direct plugin -direct = True -passenv = * -allowlist_externals = - pytest - pre-commit - {{ type_checker }} -{% if sphinx %} sphinx-build - sphinx-autobuild -{% endif %}commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - type-checking: {{ type_checker }} src tests {posargs} - tests: pytest --cov={{ package_name }} --cov-report term --cov-report xml:cov.xml {posargs} -{% if sphinx %} docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -{% endif %}""" +[tool.tox.env.pre-commit] +description = "Run pre-commit" +allowlist_externals = ["pre-commit"] +commands = [ + [ + "pre-commit", + "run", + #"--all-files", + "--show-diff-on-failure", + { replace = "posargs", default = [], extend = true }, + ], +] + +[tool.tox.env.type-checking] +description = "Run type-checking" +allowlist_externals = ["{{ type_checker }}"] +# needed otherwise throws reportUnknownMemberType errors +deps = ["pytest"] +commands = [ + [ + "{{ type_checker }}", + "src", + "tests", + { replace = "posargs", default = [ + ], extend = true }, + ], +] +[tool.tox.env.tests] +description = "Run tests" +allowlist_externals = ["pytest"] +commands = [ + [ + "pytest", + "-vv", + "--cov={{ package_name }}", + "--cov-report", + "term", + "--cov-report", + "xml:cov.xml", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +{% if sphinx %}[tool.tox.env.docs] +description = "Run docs" +allowlist_externals = ["sphinx-build", "sphinx-autobuild"] +commands = [ + [ + "sphinx-build", + "-T", + "docs", + "build/html", + { replace = "posargs", default = [ + "-EW", + "--keep-going", + ], extend = true }, + ], +] +{% endif %} [tool.ruff] src = ["src", "tests"] line-length = 88 diff --git a/tests/test_example.py b/tests/test_example.py index cd672391..0f0c329b 100644 --- a/tests/test_example.py +++ b/tests/test_example.py @@ -37,10 +37,17 @@ def run_pipe(cmd: str, cwd=None): def make_venv(project_path: Path) -> callable: - venv_path = project_path / "venv" - run_pipe(f"python -m venv {venv_path}") + venv_path = project_path / ".venv" run = functools.partial(run_pipe, cwd=str(project_path)) - run("./venv/bin/pip install -e .[dev]") + run("uv sync") # Create a lockfile and install packages + + for exe_path in [ + venv_path / "bin" / "tox", + venv_path / "bin" / "python", + venv_path / "bin" / "uv", + ]: + assert exe_path.exists(), f"UV created a venv but did not install {exe_path}" + return run @@ -53,14 +60,14 @@ def test_template_defaults(tmp_path: Path): catalog_info = tmp_path / "catalog-info.yaml" assert catalog_info.exists() assert 'typeCheckingMode = "strict"' in pyproject_toml.read_text() - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") if not run_pipe("git tag --points-at HEAD"): # Only run linkcheck if not on a tag, as the CI might not have pushed # the docs for this tag yet, so we will fail - run("./venv/bin/tox -e docs build -- -b linkcheck") - run("./venv/bin/pip install build twine") - run("./venv/bin/python -m build") - run("./venv/bin/twine check --strict dist/*") + run(".venv/bin/tox -p -e docs -- -b linkcheck") + run(".venv/bin/uv pip install twine") + run(".venv/bin/uv build") + run(".venv/bin/twine check --strict dist/*") def test_template_with_extra_code_and_api_docs(tmp_path: Path): @@ -100,7 +107,7 @@ class Thing: # Add to make sure pre-commit doesn't moan run("git add .") # Build - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") # Check it generates the right output api_dir = tmp_path / "build" / "html" / "_api" top_html = api_dir / "python_copier_template_example.html" @@ -121,13 +128,13 @@ class Thing: def test_template_mypy(tmp_path: Path): copy_project(tmp_path, type_checker="mypy") run = make_venv(tmp_path) - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") def test_template_no_docs(tmp_path: Path): copy_project(tmp_path, docs_type="README") run = make_venv(tmp_path) - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") def test_template_in_different_org_has_no_catalog(tmp_path: Path): @@ -141,7 +148,7 @@ def test_template_no_docker_has_no_docs_and_works(tmp_path: Path): container_doc = tmp_path / "docs" / "how-to" / "run-container.md" assert not container_doc.exists() run = make_venv(tmp_path) - run("./venv/bin/tox -p") + run(".venv/bin/tox -p") def test_bad_repo_name(tmp_path: Path): @@ -232,7 +239,7 @@ def test_pyright_works_in_standard_typing_mode(tmp_path: Path): # Ensure pyright is still happy run = make_venv(tmp_path) - run(f"./venv/bin/pyright {tmp_path}") + run(f".venv/bin/pyright {tmp_path}") def test_ignores_mypy_strict_mode(tmp_path: Path): diff --git a/uv.lock b/uv.lock new file mode 100644 index 00000000..b2078719 --- /dev/null +++ b/uv.lock @@ -0,0 +1,1471 @@ +version = 1 +revision = 2 +requires-python = ">=3.11" + +[[package]] +name = "accessible-pygments" +version = "0.0.5" +source = { registry = 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Content-Transfer-Encoding: 8bit Update Dockerfile based on uv docs, include uv build in devcontainer, moving from settings from Dockerfile into devcontainer.json. … Co-authored-by: Oliver Copping --- .devcontainer/devcontainer.json | 13 +++++++--- Dockerfile | 12 ++++----- template/Dockerfile.jinja | 45 +++++++++++++++++++++++---------- 3 files changed, 47 insertions(+), 23 deletions(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index fce9dd59..3e58df49 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -7,7 +7,8 @@ }, "remoteEnv": { // Allow X11 apps to run inside the container - "DISPLAY": "${localEnv:DISPLAY}" + "DISPLAY": "${localEnv:DISPLAY}", + "PATH": "${containerEnv:PATH}:/workspaces/${localWorkspaceFolderBasename}/.venv/bin" }, "customizations": { "vscode": { @@ -39,8 +40,14 @@ // Make sure SELinux does not disable with access to host filesystems like tmp "--security-opt=label=disable" ], + "mounts": [ + { + "target": "/workspaces/${localWorkspaceFolderBasename}/.venv", + "type": "volume" + } + ], // Mount the parent as /workspaces so we can pip install peers as editable "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", - // After the container is created, install the python project in editable form - "postCreateCommand": "pip install $([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e '.[dev]' && pre-commit install" + // After the container is created, install the uv env + "postCreateCommand": "uv sync && pre-commit install" } diff --git a/Dockerfile b/Dockerfile index 35d2abf7..18a093ee 100644 --- a/Dockerfile +++ b/Dockerfile @@ -3,11 +3,9 @@ ARG PYTHON_VERSION=3.11 FROM python:${PYTHON_VERSION} AS developer -# Add any system dependencies for the developer/build environment here -RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz \ - && rm -rf /var/lib/apt/lists/* +# Use this version of uv +ARG UV_VERSION=0.7 -# Set up a virtual environment and put it in PATH -RUN python -m venv /venv -ENV PATH=/venv/bin:$PATH +# Install uv using the official image +# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv +COPY --from=ghcr.io/astral-sh/uv:${UV_VERSION} /uv /uvx /bin/ diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 121856a0..a44d3ed8 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -3,21 +3,38 @@ ARG PYTHON_VERSION=3.11 FROM python:${PYTHON_VERSION} AS developer +# Use this version of uv +ARG UV_VERSION=0.7 + # Add any system dependencies for the developer/build environment here -RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz \ - && rm -rf /var/lib/apt/lists/* +# RUN apt-get update && apt-get install -y --no-install-recommends \ +# graphviz -# Set up a virtual environment and put it in PATH -RUN python -m venv /venv -ENV PATH=/venv/bin:$PATH{% if docker %} +# Install uv using the official image +# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv +COPY --from=ghcr.io/astral-sh/uv:${UV_VERSION} /uv /uvx /bin/{% if docker %} # The build stage installs the context into the venv FROM developer AS build -# Requires buildkit 0.17.0 -COPY --chmod=o+wrX . /workspaces/{{ repo_name }} -WORKDIR /workspaces/{{ repo_name }} -RUN touch dev-requirements.txt && pip install -c dev-requirements.txt . +COPY . /context +WORKDIR /context + +# Enable bytecode compilation and copy from the cache instead of linking +# since it's a mounted volume +ENV UV_COMPILE_BYTECODE=1 +ENV UV_LINK_MODE=copy + +# Install the project's dependencies using the lockfile and settings +RUN --mount=type=cache,target=/root/.cache/uv \ + --mount=type=bind,source=uv.lock,target=uv.lock \ + --mount=type=bind,source=pyproject.toml,target=pyproject.toml \ + uv sync --locked --no-install-project --no-dev + +# Then, add the rest of the project source code and install it +# Installing separately from its dependencies allows optimal layer caching +COPY . /context +RUN --mount=type=cache,target=/root/.cache/uv \ + uv sync --locked --no-dev {% if docker_debug %} FROM build AS debug @@ -44,9 +61,11 @@ CMD [ "while true; do sleep 30; done;" ] # The runtime stage copies the built venv into a slim runtime container FROM python:${PYTHON_VERSION}-slim AS runtime # Add apt-get system dependecies for runtime here if needed -COPY --from=build /venv/ /venv/ -ENV PATH=/venv/bin:$PATH -# change this entrypoint if it is not the same as the repo +# We need to keep the venv at the same absolute path as in the build stage +COPY --from=build /context/venv/ /context/venv/ +ENV PATH=/context/venv/bin:$PATH + +# Change this entrypoint if it is not the same as the repo ENTRYPOINT ["{{ repo_name }}"] CMD ["--version"]{% endif %} From 08227610b7a64e582d0f6eba2968107fb321e120 Mon Sep 17 00:00:00 2001 From: Callum Forrester Date: Mon, 19 May 2025 16:39:49 +0000 Subject: [PATCH 18/34] Update workflows to use uv MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Update Github workflows to use uv … Co-authored-by: Oliver Copping --- .../actions/install_requirements/action.yml | 18 ++++++++++-------- .github/workflows/_dist.yml | 4 +--- .github/workflows/_test.yml | 4 ++-- 3 files changed, 13 insertions(+), 13 deletions(-) diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml index 7a7bda0d..f25ba8fc 100644 --- a/.github/actions/install_requirements/action.yml +++ b/.github/actions/install_requirements/action.yml @@ -1,12 +1,12 @@ name: Install requirements -description: Install a version of python then call pip install and report what was installed +description: Install uv, use it to install dependencies and report what was installed inputs: python-version: description: Python version to install, default is from Dockerfile default: "dev" - pip-install: - description: Parameters to pass to pip install - default: "$([ -f dev-requirements.txt ] && echo '-c dev-requirements.txt') -e .[dev]" + uv-sync: + description: Parameters to pass to uv sync + default: "--locked" runs: using: composite @@ -21,15 +21,17 @@ runs: echo "PYTHON_VERSION=$PYTHON_VERSION" >> "$GITHUB_ENV" shell: bash - - name: Setup python - uses: actions/setup-python@v5 + - name: Install uv and set the python version + uses: astral-sh/setup-uv@v5 with: python-version: ${{ env.PYTHON_VERSION }} + enable-cache: true + cache-dependency-glob: "uv.lock" - name: Install packages - run: pip install ${{ inputs.pip-install }} + run: uv sync ${{ inputs.uv-sync }} shell: bash - name: Report what was installed - run: pip freeze + run: uv pip freeze shell: bash diff --git a/.github/workflows/_dist.yml b/.github/workflows/_dist.yml index b1c4c93c..25761fb2 100644 --- a/.github/workflows/_dist.yml +++ b/.github/workflows/_dist.yml @@ -27,9 +27,7 @@ jobs: run: pipx run twine check --strict dist/* - name: Install produced wheel - uses: ./.github/actions/install_requirements - with: - pip-install: dist/*.whl + run: pipx run pip install dist/*.whl - name: Test module --version works using the installed wheel # If more than one module in src/ replace with module name to test diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index 552b29d0..a186310f 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -34,7 +34,7 @@ jobs: - if: inputs.python-version == 'dev' name: Write the requirements as an artifact - run: pip freeze --exclude-editable > /tmp/dev-requirements.txt + run: uv pip freeze --exclude-editable > /tmp/dev-requirements.txt - if: inputs.python-version == 'dev' name: Upload dev-requirements.txt @@ -48,7 +48,7 @@ jobs: uses: ./.github/actions/install_requirements with: python-version: ${{ inputs.python-version }} - pip-install: ".[dev]" + uv-sync: "" - name: Run tests run: tox -e tests From 76d0fe2d254a8bf638e310e6c301671cd2dfcbe3 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Tue, 1 Jul 2025 10:05:57 +0000 Subject: [PATCH 19/34] Fix Dockerfiles (move UV_VERSION to top of file, and assign new build step) --- Dockerfile | 18 +++++++++++++----- template/Dockerfile.jinja | 25 +++++++++++++++---------- 2 files changed, 28 insertions(+), 15 deletions(-) diff --git a/Dockerfile b/Dockerfile index 18a093ee..63d28fa5 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,11 +1,19 @@ -# The devcontainer should use the developer target and run as root with podman -# or docker with user namespaces. +# Use this version of Python ARG PYTHON_VERSION=3.11 -FROM python:${PYTHON_VERSION} AS developer - # Use this version of uv ARG UV_VERSION=0.7 # Install uv using the official image # See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv -COPY --from=ghcr.io/astral-sh/uv:${UV_VERSION} /uv /uvx /bin/ +FROM ghcr.io/astral-sh/uv:${UV_VERSION} AS uv-distroless + +# The devcontainer should use the developer target and run as root with podman +# or docker with user namespaces. +FROM python:${PYTHON_VERSION} AS developer + +# Add any system dependencies for the developer/build environment here +# RUN apt-get update && apt-get install -y --no-install-recommends \ +# graphviz + +# Install from uv image +COPY --from=uv-distroless /uv /uvx /bin/ diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index a44d3ed8..1df80fd4 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -1,22 +1,27 @@ -# The devcontainer should use the developer target and run as root with podman -# or docker with user namespaces. +# Use this version of Python ARG PYTHON_VERSION=3.11 -FROM python:${PYTHON_VERSION} AS developer - # Use this version of uv ARG UV_VERSION=0.7 +# Install uv using the official image +# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv +FROM ghcr.io/astral-sh/uv:${UV_VERSION} AS uv-distroless + +# The devcontainer should use the developer target and run as root with podman +# or docker with user namespaces. +FROM python:${PYTHON_VERSION} AS developer + # Add any system dependencies for the developer/build environment here # RUN apt-get update && apt-get install -y --no-install-recommends \ # graphviz -# Install uv using the official image -# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv -COPY --from=ghcr.io/astral-sh/uv:${UV_VERSION} /uv /uvx /bin/{% if docker %} +# Install from uv image +COPY --from=uv-distroless /uv /uvx /bin/{% if docker %} # The build stage installs the context into the venv FROM developer AS build -COPY . /context +# Copy only dependency files first +COPY pyproject.toml uv.lock /context/ WORKDIR /context # Enable bytecode compilation and copy from the cache instead of linking @@ -63,8 +68,8 @@ FROM python:${PYTHON_VERSION}-slim AS runtime # Add apt-get system dependecies for runtime here if needed # We need to keep the venv at the same absolute path as in the build stage -COPY --from=build /context/venv/ /context/venv/ -ENV PATH=/context/venv/bin:$PATH +COPY --from=build /context/.venv/ /context/.venv/ +ENV PATH=/context/.venv/bin:$PATH # Change this entrypoint if it is not the same as the repo ENTRYPOINT ["{{ repo_name }}"] From 063674b94440b0bdb0ee11e4f5cfd9d38e810704 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 7 Aug 2025 08:36:09 +0000 Subject: [PATCH 20/34] Convert _dist.yml to use uvx over pipx --- .github/workflows/_dist.yml | 12 ++++++++++-- 1 file changed, 10 insertions(+), 2 deletions(-) diff --git a/.github/workflows/_dist.yml b/.github/workflows/_dist.yml index 25761fb2..debbea0d 100644 --- a/.github/workflows/_dist.yml +++ b/.github/workflows/_dist.yml @@ -17,6 +17,14 @@ jobs: export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) && pipx run build + - name: Install uv + uses: astral-sh/setup-uv@v6 + + - name: Build sdist and wheel + run: > + export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) && + uvx --from build pyproject-build + - name: Upload sdist and wheel as artifacts uses: actions/upload-artifact@v4 with: @@ -24,10 +32,10 @@ jobs: path: dist - name: Check for packaging errors - run: pipx run twine check --strict dist/* + run: uvx twine check --strict dist/* - name: Install produced wheel - run: pipx run pip install dist/*.whl + run: python -m pip install dist/*.whl - name: Test module --version works using the installed wheel # If more than one module in src/ replace with module name to test From d2dc4c21ac6bf6cb454973b58659c50bb29e0c2d Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 7 Aug 2025 09:00:15 +0000 Subject: [PATCH 21/34] Update to use setup-uv@v6 --- .github/actions/install_requirements/action.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml index f25ba8fc..7e250dba 100644 --- a/.github/actions/install_requirements/action.yml +++ b/.github/actions/install_requirements/action.yml @@ -22,11 +22,12 @@ runs: shell: bash - name: Install uv and set the python version - uses: astral-sh/setup-uv@v5 + uses: astral-sh/setup-uv@v6 with: python-version: ${{ env.PYTHON_VERSION }} enable-cache: true cache-dependency-glob: "uv.lock" + activate-environment: true - name: Install packages run: uv sync ${{ inputs.uv-sync }} From b8b3f901abcd8e8e5d1574bb5bd9f8a63a687add Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 7 Aug 2025 12:31:29 +0000 Subject: [PATCH 22/34] Convert to use dls ubuntu-devcontainer --- .devcontainer/devcontainer.json | 46 +++++++++++++++----- Dockerfile | 25 +++-------- template/Dockerfile.jinja | 77 +++++++++------------------------ 3 files changed, 63 insertions(+), 85 deletions(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 3e58df49..4ac664d4 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -8,13 +8,28 @@ "remoteEnv": { // Allow X11 apps to run inside the container "DISPLAY": "${localEnv:DISPLAY}", - "PATH": "${containerEnv:PATH}:/workspaces/${localWorkspaceFolderBasename}/.venv/bin" + // We put venv on a different volume to cache so have to copy + "UV_LINK_MODE": "copy", + // Do the equivalent of "activate" the venv so we don't have to "uv run" everything + "PATH": "/workspaces/${localWorkspaceFolderBasename}/.venv/bin:${localEnv:PATH}" }, "customizations": { "vscode": { // Set *default* container specific settings.json values on container create. "settings": { - "python.defaultInterpreterPath": "/venv/bin/python" + "python.defaultInterpreterPath": "/workspaces/${localWorkspaceFolderBasename}/.venv/bin/python", + "python.terminal.activateEnvInCurrentTerminal": false, + "python.terminal.activateEnvironment": false, + "python.testing.unittestEnabled": false, + "python.testing.pytestEnabled": true, + "editor.formatOnSave": true, + "editor.codeActionsOnSave": { + "source.organizeImports": "explicit" + }, + "remote.autoForwardPorts": false, + "[python]": { + "editor.defaultFormatter": "charliermarsh.ruff" + } }, // Add the IDs of extensions you want installed when the container is created. "extensions": [ @@ -28,19 +43,30 @@ ] } }, - "features": { - // add in eternal history and other bash features - "ghcr.io/diamondlightsource/devcontainer-features/bash-config:1": {} - }, - // Create the config folder for the bash-config feature - "initializeCommand": "mkdir -p ${localEnv:HOME}/.config/bash-config", + // Create the config folder for the bash-config feature and uv cache + "initializeCommand": "mkdir -p ${localEnv:HOME}/.config/terminal-config ${localEnv:HOME}/.cache/uv", "runArgs": [ // Allow the container to access the host X11 display and EPICS CA "--net=host", // Make sure SELinux does not disable with access to host filesystems like tmp "--security-opt=label=disable" ], + // Populate the user's terminal config folder with default config if it is blank + "onCreateCommand": "/root/terminal-config/ensure-user-terminal-config.sh", "mounts": [ + // Mount in the user terminal config folder so it can be edited + { + "source": "${localEnv:HOME}/.config/terminal-config", + "target": "/user-terminal-config", + "type": "bind" + }, + // Keep a persistent cross container cache for uv + { + "source": "${localEnv:HOME}/.cache/uv", + "target": "/root/.cache/uv", + "type": "bind" + }, + // Use a volume mount for the uv venv so it is local to the container { "target": "/workspaces/${localWorkspaceFolderBasename}/.venv", "type": "volume" @@ -48,6 +74,6 @@ ], // Mount the parent as /workspaces so we can pip install peers as editable "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", - // After the container is created, install the uv env - "postCreateCommand": "uv sync && pre-commit install" + // After the container is created, install the python project in editable form + "postCreateCommand": "uv sync && uv run pre-commit install" } diff --git a/Dockerfile b/Dockerfile index 63d28fa5..875536ca 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,19 +1,6 @@ -# Use this version of Python -ARG PYTHON_VERSION=3.11 -# Use this version of uv -ARG UV_VERSION=0.7 - -# Install uv using the official image -# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv -FROM ghcr.io/astral-sh/uv:${UV_VERSION} AS uv-distroless - -# The devcontainer should use the developer target and run as root with podman -# or docker with user namespaces. -FROM python:${PYTHON_VERSION} AS developer - -# Add any system dependencies for the developer/build environment here -# RUN apt-get update && apt-get install -y --no-install-recommends \ -# graphviz - -# Install from uv image -COPY --from=uv-distroless /uv /uvx /bin/ +# The developer stage is used as a devcontainer including dev versions +# of the build dependencies +FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer +RUN apt-get update -y && apt-get install -y --no-install-recommends \ + libevent-dev \ + libreadline-dev diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 1df80fd4..7f25161b 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -1,33 +1,15 @@ -# Use this version of Python -ARG PYTHON_VERSION=3.11 -# Use this version of uv -ARG UV_VERSION=0.7 - -# Install uv using the official image -# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv -FROM ghcr.io/astral-sh/uv:${UV_VERSION} AS uv-distroless - -# The devcontainer should use the developer target and run as root with podman -# or docker with user namespaces. -FROM python:${PYTHON_VERSION} AS developer - -# Add any system dependencies for the developer/build environment here -# RUN apt-get update && apt-get install -y --no-install-recommends \ -# graphviz - -# Install from uv image -COPY --from=uv-distroless /uv /uvx /bin/{% if docker %} - -# The build stage installs the context into the venv +# The developer stage is used as a devcontainer including dev versions +# of the build dependencies +FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer +RUN apt-get update -y && apt-get install -y --no-install-recommends \ + libevent-dev \ + libreadline-dev{% if docker %} + +# The build stage makes some assets using the developer tools FROM developer AS build # Copy only dependency files first -COPY pyproject.toml uv.lock /context/ -WORKDIR /context - -# Enable bytecode compilation and copy from the cache instead of linking -# since it's a mounted volume -ENV UV_COMPILE_BYTECODE=1 -ENV UV_LINK_MODE=copy +COPY pyproject.toml uv.lock /assets/ +WORKDIR /assets # Install the project's dependencies using the lockfile and settings RUN --mount=type=cache,target=/root/.cache/uv \ @@ -37,39 +19,22 @@ RUN --mount=type=cache,target=/root/.cache/uv \ # Then, add the rest of the project source code and install it # Installing separately from its dependencies allows optimal layer caching -COPY . /context +COPY . /assets/ RUN --mount=type=cache,target=/root/.cache/uv \ uv sync --locked --no-dev -{% if docker_debug %} -FROM build AS debug - -{% if git_platform=="github.com" %} -# Set origin to use ssh -RUN git remote set-url origin git@github.com:{{github_org}}/{{repo_name}}.git -{% endif %} - -# For this pod to understand finding user information from LDAP -RUN apt update -RUN DEBIAN_FRONTEND=noninteractive apt install libnss-ldapd -y -RUN sed -i 's/files/ldap files/g' /etc/nsswitch.conf - -# Make editable and debuggable -RUN pip install debugpy -RUN pip install -e . - -# Alternate entrypoint to allow devcontainer to attach -ENTRYPOINT [ "/bin/bash", "-c", "--" ] -CMD [ "while true; do sleep 30; done;" ] - -{% endif %} -# The runtime stage copies the built venv into a slim runtime container -FROM python:${PYTHON_VERSION}-slim AS runtime -# Add apt-get system dependecies for runtime here if needed +# The runtime stage installs runtime deps then copies in built assets +# This time we remove the apt lists to save disk space +FROM ubuntu:noble as runtime +RUN apt-get update -y && apt-get install -y --no-install-recommends \ + libevent \ + libreadline \ + && rm -rf /var/lib/apt/lists/* +COPY --from=build /assets / # We need to keep the venv at the same absolute path as in the build stage -COPY --from=build /context/.venv/ /context/.venv/ -ENV PATH=/context/.venv/bin:$PATH +COPY --from=build /assets/.venv/ .venv/ +ENV PATH=.venv/bin:$PATH # Change this entrypoint if it is not the same as the repo ENTRYPOINT ["{{ repo_name }}"] From dd1a4ec6f86fc8754f15aa3ebc2881803e4d7a5a Mon Sep 17 00:00:00 2001 From: Giles Knap Date: Fri, 8 Aug 2025 07:35:31 +0000 Subject: [PATCH 23/34] fix apt installs in Dockerfile template --- template/Dockerfile.jinja | 17 ++++++++++------- 1 file changed, 10 insertions(+), 7 deletions(-) diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 7f25161b..32a73564 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -1,9 +1,11 @@ # The developer stage is used as a devcontainer including dev versions # of the build dependencies FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer -RUN apt-get update -y && apt-get install -y --no-install-recommends \ - libevent-dev \ - libreadline-dev{% if docker %} + +# Add any system dependencies for the developer/build environment here +RUN apt-get update && apt-get install -y --no-install-recommends \ + graphviz \ + && rm -rf /var/lib/apt/lists/* # The build stage makes some assets using the developer tools FROM developer AS build @@ -26,10 +28,11 @@ RUN --mount=type=cache,target=/root/.cache/uv \ # The runtime stage installs runtime deps then copies in built assets # This time we remove the apt lists to save disk space FROM ubuntu:noble as runtime -RUN apt-get update -y && apt-get install -y --no-install-recommends \ - libevent \ - libreadline \ - && rm -rf /var/lib/apt/lists/* + +# Add apt-get system dependecies for runtime here if needed +{# RUN apt-get update && apt-get install -y --no-install-recommends \ + xxx \ + && rm -rf /var/lib/apt/lists/* #} COPY --from=build /assets / # We need to keep the venv at the same absolute path as in the build stage From 581aabaad974f691a75b446d0d4eabddd0946e99 Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Wed, 13 Aug 2025 08:58:46 +0100 Subject: [PATCH 24/34] Add missing if docker jinja tag --- template/Dockerfile.jinja | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 32a73564..93f594ff 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -5,7 +5,7 @@ FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ graphviz \ - && rm -rf /var/lib/apt/lists/* + && rm -rf /var/lib/apt/lists/*{% if docker %} # The build stage makes some assets using the developer tools FROM developer AS build From cf3f4bea3a8933e60b774b32fe8b2eec853aa682 Mon Sep 17 00:00:00 2001 From: Tom Cobb Date: Thu, 18 Sep 2025 13:58:09 +0000 Subject: [PATCH 25/34] Add in changes from ophyd-async --- .github/workflows/_dist.yml | 4 +-- .github/workflows/_docs.yml | 6 ++--- .github/workflows/_test.yml | 26 +++---------------- .github/workflows/_tox.yml | 6 ++--- .github/workflows/ci.yml | 2 +- .pre-commit-config.yaml | 18 ++++++------- .python-version | 1 + template/.python-version | 1 + template/Dockerfile.jinja | 10 +------ template/pyproject.toml.jinja | 4 +-- template/uv.lock | 3 +++ .../workflows/ci.yml.jinja" | 4 --- 12 files changed, 29 insertions(+), 56 deletions(-) create mode 100644 .python-version create mode 120000 template/.python-version create mode 100644 template/uv.lock diff --git a/.github/workflows/_dist.yml b/.github/workflows/_dist.yml index b1c4c93c..65097312 100644 --- a/.github/workflows/_dist.yml +++ b/.github/workflows/_dist.yml @@ -27,9 +27,7 @@ jobs: run: pipx run twine check --strict dist/* - name: Install produced wheel - uses: ./.github/actions/install_requirements - with: - pip-install: dist/*.whl + run: python -m pip install dist/*.whl - name: Test module --version works using the installed wheel # If more than one module in src/ replace with module name to test diff --git a/.github/workflows/_docs.yml b/.github/workflows/_docs.yml index 1f5491ba..84d56de1 100644 --- a/.github/workflows/_docs.yml +++ b/.github/workflows/_docs.yml @@ -20,11 +20,11 @@ jobs: - name: Install system packages run: sudo apt-get install graphviz - - name: Install python packages - uses: ./.github/actions/install_requirements + - name: Install uv + uses: astral-sh/setup-uv@v5 - name: Build docs - run: tox -e docs + run: uv run --locked tox -e docs - name: Remove environment.pickle run: rm build/html/.doctrees/environment.pickle diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index 977f161f..b67345aa 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -16,6 +16,7 @@ on: env: # https://github.com/pytest-dev/pytest/issues/2042 PY_IGNORE_IMPORTMISMATCH: "1" + UV_PYTHON: ${{ inputs.python-version }} jobs: run: @@ -28,30 +29,11 @@ jobs: # Need this to get version number from last tag fetch-depth: 0 - - if: inputs.python-version == 'dev' - name: Install dev versions of python packages - uses: ./.github/actions/install_requirements - - - if: inputs.python-version == 'dev' - name: Write the requirements as an artifact - run: uv pip freeze --exclude-editable > /tmp/dev-requirements.txt - - - if: inputs.python-version == 'dev' - name: Upload dev-requirements.txt - uses: actions/upload-artifact@v4 - with: - name: dev-requirements - path: /tmp/dev-requirements.txt - - - if: inputs.python-version != 'dev' - name: Install latest versions of python packages - uses: ./.github/actions/install_requirements - with: - python-version: ${{ inputs.python-version }} - pip-install: ".[dev]" + - name: Install uv + uses: astral-sh/setup-uv@v5 - name: Run tests - run: tox -e tests + run: uv run --locked tox -e tests - name: Upload coverage to Codecov uses: codecov/codecov-action@v5 diff --git a/.github/workflows/_tox.yml b/.github/workflows/_tox.yml index a13536d3..705556ed 100644 --- a/.github/workflows/_tox.yml +++ b/.github/workflows/_tox.yml @@ -15,8 +15,8 @@ jobs: - name: Checkout uses: actions/checkout@v4 - - name: Install python packages - uses: ./.github/actions/install_requirements + - name: Install uv + uses: astral-sh/setup-uv@v5 - name: Run tox - run: tox -e ${{ inputs.tox }} + run: uv run --locked tox -e ${{ inputs.tox }} diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 9169f0c9..5f2ca66d 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -17,8 +17,8 @@ jobs: test: uses: ./.github/workflows/_test.yml with: - python-version: dev runs-on: ubuntu-latest + python-version: "" secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0e712089..b1c8b486 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -3,19 +3,11 @@ repos: rev: v5.0.0 hooks: - id: check-added-large-files + args: ["--maxkb=1000"] # uv.lock is more than 500kB - id: check-yaml - id: check-merge-conflict - id: end-of-file-fixer - - repo: https://github.com/astral-sh/uv-pre-commit - # uv version. - rev: 0.7.2 - hooks: - - id: uv-lock - # Synchronize dependencies upon branch checkout, pull or rebase - # requires extra hook types to be installed!!! - # - id: uv-sync - - repo: local hooks: # Run the linter. @@ -33,3 +25,11 @@ repos: entry: ruff format --force-exclude types: [python] require_serial: true + + # Make sure lock file is up to date. + - id: uv-lock + name: update uv.lock + pass_filenames: false + language: system + entry: uv lock + files: ^(uv\.lock|pyproject\.toml|uv\.toml)$ diff --git a/.python-version b/.python-version new file mode 100644 index 00000000..2c073331 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.11 diff --git a/template/.python-version b/template/.python-version new file mode 120000 index 00000000..0f0852e2 --- /dev/null +++ b/template/.python-version @@ -0,0 +1 @@ +../.python-version \ No newline at end of file diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 6c8909d5..c0470dd8 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -1,19 +1,11 @@ # The devcontainer should use the developer target and run as root with podman # or docker with user namespaces. -ARG PYTHON_VERSION=3.11 -FROM python:${PYTHON_VERSION} AS developer - -# Use this version of uv -ARG UV_VERSION=0.7.4 +FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble as developer # Add any system dependencies for the developer/build environment here # RUN apt-get update && apt-get install -y --no-install-recommends \ # graphviz -# Install uv using the official image -# See https://docs.astral.sh/uv/guides/integration/docker/#installing-uv -COPY --from=ghcr.io/astral-sh/uv:${UV_VERSION} /uv /uvx /bin/ - # The build stage installs the context into the venv FROM developer AS build COPY . /context diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index 49d9da62..4f7449e0 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -18,7 +18,7 @@ license.file = "LICENSE" readme = "README.md" requires-python = ">=3.11" -[project.optional-dependencies] +[dependency-groups] dev = [ "build", "copier", @@ -34,7 +34,7 @@ dev = [ {% if sphinx %}"sphinx-autobuild", "sphinx-copybutton", "sphinx-design", - {% endif %}"tox-uv", + {% endif %}"tox-direct", "twine", "types-mock", ] diff --git a/template/uv.lock b/template/uv.lock new file mode 100644 index 00000000..9431a635 --- /dev/null +++ b/template/uv.lock @@ -0,0 +1,3 @@ +version = 1 +revision = 3 +requires-python = ">=3.11" diff --git "a/template/{% if git_platform==\"github.com\" %}.github{% endif %}/workflows/ci.yml.jinja" "b/template/{% if git_platform==\"github.com\" %}.github{% endif %}/workflows/ci.yml.jinja" index a6b536aa..7674c4b3 100644 --- "a/template/{% if git_platform==\"github.com\" %}.github{% endif %}/workflows/ci.yml.jinja" +++ "b/template/{% if git_platform==\"github.com\" %}.github{% endif %}/workflows/ci.yml.jinja" @@ -20,10 +20,6 @@ jobs: matrix: runs-on: ["ubuntu-latest"] # can add windows-latest, macos-latest python-version: ["3.11", "3.12", "3.13"] - include: - # Include one that runs in the dev environment - - runs-on: "ubuntu-latest" - python-version: "dev" fail-fast: false uses: ./.github/workflows/_test.yml with: From 87224d4a326ab2c57776626c806eadd1a700004b Mon Sep 17 00:00:00 2001 From: Tom Cobb Date: Mon, 22 Sep 2025 14:23:51 +0000 Subject: [PATCH 26/34] tox-uv tweaks --- .devcontainer/devcontainer.json | 14 +- .../actions/install_requirements/action.yml | 38 -- .github/workflows/_dist.yml | 5 - .github/workflows/_test.yml | 4 +- .github/workflows/ci.yml | 1 - .github/workflows/periodic.yml | 2 +- .pre-commit-config.yaml | 4 +- Dockerfile | 4 + docs/how-to/build-docs.md | 4 +- pyproject.toml | 59 +-- template/Dockerfile.jinja | 77 ++- template/pyproject.toml.jinja | 91 +--- .../actions" | 1 - tests/test_example.py | 8 +- uv.lock | 459 +++--------------- 15 files changed, 157 insertions(+), 614 deletions(-) delete mode 100644 .github/actions/install_requirements/action.yml delete mode 120000 "template/{% if git_platform==\"github.com\" %}.github{% endif %}/actions" diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 5ec8b838..9a414138 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -19,17 +19,7 @@ "settings": { "python.defaultInterpreterPath": "/workspaces/${localWorkspaceFolderBasename}/.venv/bin/python", "python.terminal.activateEnvInCurrentTerminal": false, - "python.terminal.activateEnvironment": false, - "python.testing.unittestEnabled": false, - "python.testing.pytestEnabled": true, - "editor.formatOnSave": true, - "editor.codeActionsOnSave": { - "source.organizeImports": "explicit" - }, - "remote.autoForwardPorts": false, - "[python]": { - "editor.defaultFormatter": "charliermarsh.ruff" - } + "python.terminal.activateEnvironment": false }, // Add the IDs of extensions you want installed when the container is created. "extensions": [ @@ -73,5 +63,5 @@ // Mount the parent as /workspaces so we can pip install peers as editable "workspaceMount": "source=${localWorkspaceFolder}/..,target=/workspaces,type=bind", // After the container is created, install the python project in editable form - "postCreateCommand": "uv sync && uv run pre-commit install" + "postCreateCommand": "uv sync && uv run pre-commit install --install-hooks" } diff --git a/.github/actions/install_requirements/action.yml b/.github/actions/install_requirements/action.yml deleted file mode 100644 index 7e250dba..00000000 --- a/.github/actions/install_requirements/action.yml +++ /dev/null @@ -1,38 +0,0 @@ -name: Install requirements -description: Install uv, use it to install dependencies and report what was installed -inputs: - python-version: - description: Python version to install, default is from Dockerfile - default: "dev" - uv-sync: - description: Parameters to pass to uv sync - default: "--locked" - -runs: - using: composite - steps: - - name: Get version of python - run: | - PYTHON_VERSION="${{ inputs.python-version }}" - if [ $PYTHON_VERSION == "dev" ]; then - # python version from Dockerfile, removing potential pinned sha - PYTHON_VERSION=$(sed -Ene "s/ARG PYTHON_VERSION=([0-9\.]+).*/\1/p" Dockerfile) - fi - echo "PYTHON_VERSION=$PYTHON_VERSION" >> "$GITHUB_ENV" - shell: bash - - - name: Install uv and set the python version - uses: astral-sh/setup-uv@v6 - with: - python-version: ${{ env.PYTHON_VERSION }} - enable-cache: true - cache-dependency-glob: "uv.lock" - activate-environment: true - - - name: Install packages - run: uv sync ${{ inputs.uv-sync }} - shell: bash - - - name: Report what was installed - run: uv pip freeze - shell: bash diff --git a/.github/workflows/_dist.yml b/.github/workflows/_dist.yml index debbea0d..04522af3 100644 --- a/.github/workflows/_dist.yml +++ b/.github/workflows/_dist.yml @@ -12,11 +12,6 @@ jobs: # Need this to get version number from last tag fetch-depth: 0 - - name: Build sdist and wheel - run: > - export SOURCE_DATE_EPOCH=$(git log -1 --pretty=%ct) && - pipx run build - - name: Install uv uses: astral-sh/setup-uv@v6 diff --git a/.github/workflows/_test.yml b/.github/workflows/_test.yml index b67345aa..b7d678b9 100644 --- a/.github/workflows/_test.yml +++ b/.github/workflows/_test.yml @@ -3,8 +3,8 @@ on: inputs: python-version: type: string - description: The version of python to install - required: true + description: The version of python to install, default is from .python-version file + default: "" runs-on: type: string description: The runner to run this job on diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5f2ca66d..e3fc9c50 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -18,7 +18,6 @@ jobs: uses: ./.github/workflows/_test.yml with: runs-on: ubuntu-latest - python-version: "" secrets: CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} diff --git a/.github/workflows/periodic.yml b/.github/workflows/periodic.yml index e2a0fd1b..67060640 100644 --- a/.github/workflows/periodic.yml +++ b/.github/workflows/periodic.yml @@ -10,4 +10,4 @@ jobs: linkcheck: uses: ./.github/workflows/_tox.yml with: - tox: docs build -- -b linkcheck + tox: docs -- build -b linkcheck diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b1c8b486..857052c3 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -26,10 +26,10 @@ repos: types: [python] require_serial: true - # Make sure lock file is up to date. + # Make sure lock file satisfies dependencies in pyproject.toml. - id: uv-lock name: update uv.lock pass_filenames: false language: system entry: uv lock - files: ^(uv\.lock|pyproject\.toml|uv\.toml)$ + files: ^(uv\.lock|pyproject\.toml)$ diff --git a/Dockerfile b/Dockerfile index 98d8bdc3..30fa513a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -1,3 +1,7 @@ # The developer stage is used as a devcontainer including dev versions # of the build dependencies FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer + +# Add any system dependencies for the developer/build environment here +RUN apt-get update && apt-get install -y --no-install-recommends \ + graphviz diff --git a/docs/how-to/build-docs.md b/docs/how-to/build-docs.md index f557337f..a638b215 100644 --- a/docs/how-to/build-docs.md +++ b/docs/how-to/build-docs.md @@ -23,7 +23,7 @@ $ firefox build/html/index.html You can also run an autobuild process, which will watch your `docs` directory for changes and rebuild whenever it sees changes, reloading any browsers watching the pages: ``` -$ tox -e docs autobuild +$ tox -e docs -- autobuild ``` You can view the pages at localhost: @@ -35,5 +35,5 @@ $ firefox http://localhost:8000 If you are making changes to source code too, you can tell it to watch changes in this directory too: ``` -$ tox -e docs autobuild -- --watch src +$ tox -e docs -- autobuild --watch src ``` diff --git a/pyproject.toml b/pyproject.toml index 5c959776..a44d03d9 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,8 +18,7 @@ dev = [ "sphinx-autobuild", "sphinx-copybutton", "sphinx-design", - "tox-direct", - "twine>=6.1.0", + "tox-uv", ] [tool.setuptools_scm] @@ -32,51 +31,21 @@ addopts = """ # Doctest python code in docs, python code in src docstrings, test functions in tests testpaths = "tests" - +# tox must be configured via an embedded ini string to support +# using positional args as parts of command arguments [tool.tox] -skipsdist = true -requires = ["tox-uv>=1.25.0"] -# envs to runs automatically with tox -p -env_list = ["pre-commit", "tests", "docs"] - -[tool.tox.env] -passenv = { "*" = "" } -# Include setuptools, pip, ... in the tox envs -uv_seed = { enabled = true } - -[tool.tox.env.pre-commit] -description = "Run pre-commit" -allowlist_externals = ["pre-commit"] -commands = [ - [ - "pre-commit", - "run", - #"--all-files", - "--show-diff-on-failure", - { replace = "posargs", default = [], extend = true }, - ], -] - -[tool.tox.env.tests] -description = "Run tests" -allowlist_externals = ["pytest"] -commands = [["pytest", { replace = "posargs", default = [], extend = true }]] +legacy_tox_ini = """ +[tox] +skipsdist=True +env_list = pre-commit,tests,docs -[tool.tox.env.docs] -description = "Run docs" -allowlist_externals = ["sphinx-build", "sphinx-autobuild"] -commands = [ - [ - "sphinx-build", - "-T", - "docs", - "build/html", - { replace = "posargs", default = [ - "-EW", - "--keep-going", - ], extend = true }, - ], -] +[testenv:{pre-commit,tests,docs}] +passenv = * +commands = + pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} + tests: pytest {posargs} + docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html +""" [tool.ruff] src = ["src", "tests"] diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index 9e44cc81..ec3a24ae 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -1,59 +1,58 @@ # The devcontainer should use the developer target and run as root with podman # or docker with user namespaces. -FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble as developer +FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer # Add any system dependencies for the developer/build environment here -# RUN apt-get update && apt-get install -y --no-install-recommends \ -# graphviz +RUN apt-get update && apt-get install -y --no-install-recommends \ + graphviz{% if docker %} # The build stage installs the context into the venv FROM developer AS build -COPY . /context -WORKDIR /context -# Enable bytecode compilation and copy from the cache instead of linking -# since it's a mounted volume -ENV UV_COMPILE_BYTECODE=1 -ENV UV_LINK_MODE=copy +# Change the working directory to the `app` directory +# and copy in the project +WORKDIR /app +COPY . /app +RUN chmod o+wrX . -# Install the project's dependencies using the lockfile and settings +# Sync the project without its dev dependencies RUN --mount=type=cache,target=/root/.cache/uv \ - --mount=type=bind,source=uv.lock,target=uv.lock \ - --mount=type=bind,source=pyproject.toml,target=pyproject.toml \ - uv sync --locked --no-install-project --no-dev + uv sync --locked --no-editable --no-dev -# Then, add the rest of the project source code and install it -# Installing separately from its dependencies allows optimal layer caching -COPY . /context -RUN --mount=type=cache,target=/root/.cache/uv \ - uv sync --locked --no-dev -# Requires buildkit 0.17.0 -COPY . /workspaces/{{ repo_name }} -WORKDIR /workspaces/{{ repo_name }} -RUN chmod o+wrX . && touch dev-requirements.txt && pip install -c dev-requirements.txt . +{% if docker_debug %} +FROM build AS debug -# Install the project's dependencies using the lockfile and settings -RUN --mount=type=cache,target=/root/.cache/uv \ - --mount=type=bind,source=uv.lock,target=uv.lock \ - --mount=type=bind,source=pyproject.toml,target=pyproject.toml \ - uv sync --locked --no-install-project --no-dev +{% if git_platform=="github.com" %} +# Set origin to use ssh +RUN git remote set-url origin git@github.com:{{github_org}}/{{repo_name}}.git +{% endif %} -# Then, add the rest of the project source code and install it -# Installing separately from its dependencies allows optimal layer caching -COPY . /assets/ -RUN --mount=type=cache,target=/root/.cache/uv \ - uv sync --locked --no-dev +# For this pod to understand finding user information from LDAP +RUN apt update +RUN DEBIAN_FRONTEND=noninteractive apt install libnss-ldapd -y +RUN sed -i 's/files/ldap files/g' /etc/nsswitch.conf -# The runtime stage installs runtime deps then copies in built assets -# This time we remove the apt lists to save disk space -FROM ubuntu:noble as runtime +# Make editable and debuggable +RUN uv pip install debugpy +RUN uv pip install -e . + +# Alternate entrypoint to allow devcontainer to attach +ENTRYPOINT [ "/bin/bash", "-c", "--" ] +CMD [ "while true; do sleep 30; done;" ] + +{% endif %} +# The runtime stage copies the built venv into a runtime container +FROM ubuntu:noble AS runtime # Add apt-get system dependecies for runtime here if needed +# RUN apt-get update && apt-get install -y --no-install-recommends \ +# some-library \ +# && rm -rf /var/lib/apt/lists/* -# We need to keep the venv at the same absolute path as in the build stage -COPY --from=build /context/venv/ /context/venv/ -ENV PATH=/context/venv/bin:$PATH +# Copy the environment, but not the source code +COPY --from=build /app/.venv /app/.venv +ENV PATH=/app/.venv/bin:$PATH -# Change this entrypoint if it is not the same as the repo +# change this entrypoint if it is not the same as the repo ENTRYPOINT ["{{ repo_name }}"] CMD ["--version"]{% endif %} diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index 9fb93c6e..1617ac05 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -20,12 +20,10 @@ requires-python = ">=3.11" [dependency-groups] dev = [ - "build", "copier", {% if type_checker=="mypy" %}"mypy", {% endif %}{% if sphinx %}"myst-parser", - {% endif %}"pipdeptree", - "pre-commit", + {% endif %}"pre-commit", {% if sphinx %}"pydata-sphinx-theme>=0.12", {% endif %}{% if type_checker=="pyright" %}"pyright", {% endif %}"pytest>8.3.4", @@ -34,10 +32,8 @@ dev = [ {% if sphinx %}"sphinx-autobuild", "sphinx-copybutton", "sphinx-design", - {% endif %}"tox-direct", - "twine", + {% endif %}"tox-uv", "types-mock", - "uv~=0.7.0", ] [project.scripts] @@ -80,78 +76,23 @@ data_file = "/tmp/{{ package_name }}.coverage" # Tests are run from installed location, map back to the src directory source = ["src", "**/site-packages/"] +# tox must be configured via an embedded ini string to support +# using positional args as parts of command arguments [tool.tox] -skipsdist = true -requires = ["tox-uv>=1.25.0"] -# envs to runs automatically with tox -p -env_list = ["pre-commit", "type-checking", "docs"] # "tests"] +legacy_tox_ini = """ +[tox] +skipsdist = True +env_list = pre-commit,type-checking,tests{% if sphinx %},docs{% endif %} -[tool.tox.env] -passenv = { "*" = "" } -# Include setuptools, pip, ... in the tox envs -uv_seed = { enabled = true } +[testenv:{pre-commit,type-checking,tests{% if sphinx %},docs{% endif %}}] +passenv = * +commands = + pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} + type-checking: {{ type_checker }} src tests {posargs} + tests: pytest --cov={{ package_name }} --cov-report term --cov-report xml:cov.xml {posargs} +{% if sphinx %} docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html +{% endif %}""" -[tool.tox.env.pre-commit] -description = "Run pre-commit" -allowlist_externals = ["pre-commit"] -commands = [ - [ - "pre-commit", - "run", - #"--all-files", - "--show-diff-on-failure", - { replace = "posargs", default = [], extend = true }, - ], -] - -[tool.tox.env.type-checking] -description = "Run type-checking" -allowlist_externals = ["{{ type_checker }}"] -# needed otherwise throws reportUnknownMemberType errors -deps = ["pytest"] -commands = [ - [ - "{{ type_checker }}", - "src", - "tests", - { replace = "posargs", default = [ - ], extend = true }, - ], -] - -[tool.tox.env.tests] -description = "Run tests" -allowlist_externals = ["pytest"] -commands = [ - [ - "pytest", - "-vv", - "--cov={{ package_name }}", - "--cov-report", - "term", - "--cov-report", - "xml:cov.xml", - { replace = "posargs", default = [ - ], extend = true }, - ], -] - -{% if sphinx %}[tool.tox.env.docs] -description = "Run docs" -allowlist_externals = ["sphinx-build", "sphinx-autobuild"] -commands = [ - [ - "sphinx-build", - "-T", - "docs", - "build/html", - { replace = "posargs", default = [ - "-EW", - "--keep-going", - ], extend = true }, - ], -] -{% endif %} [tool.ruff] src = ["src", "tests"] line-length = 88 diff --git "a/template/{% if git_platform==\"github.com\" %}.github{% endif %}/actions" "b/template/{% if git_platform==\"github.com\" %}.github{% endif %}/actions" deleted file mode 120000 index c18123eb..00000000 --- "a/template/{% if git_platform==\"github.com\" %}.github{% endif %}/actions" +++ /dev/null @@ -1 +0,0 @@ -../../.github/actions/ \ No newline at end of file diff --git a/tests/test_example.py b/tests/test_example.py index 587f8a5e..7e211369 100644 --- a/tests/test_example.py +++ b/tests/test_example.py @@ -44,7 +44,6 @@ def make_venv(project_path: Path) -> callable: for exe_path in [ venv_path / "bin" / "tox", venv_path / "bin" / "python", - venv_path / "bin" / "uv", ]: assert exe_path.exists(), f"UV created a venv but did not install {exe_path}" @@ -64,10 +63,9 @@ def test_template_defaults(tmp_path: Path): if not run_pipe("git tag --points-at HEAD"): # Only run linkcheck if not on a tag, as the CI might not have pushed # the docs for this tag yet, so we will fail - run(".venv/bin/tox -p -e docs -- -b linkcheck") - run(".venv/bin/uv pip install twine") - run(".venv/bin/uv build") - run(".venv/bin/twine check --strict dist/*") + 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b/pyproject.toml index a44d03d9..cf487adc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -55,14 +55,7 @@ lint.select = [ "C4", # flake8-comprehensions - https://docs.astral.sh/ruff/rules/#flake8-comprehensions-c4 "E", # pycodestyle errors - https://docs.astral.sh/ruff/rules/#error-e "F", # pyflakes rules - https://docs.astral.sh/ruff/rules/#pyflakes-f - "N", # pep8-naming - https://docs.astral.sh/ruff/rules/#pep8-naming-n "W", # pycodestyle warnings - https://docs.astral.sh/ruff/rules/#warning-w "I", # isort - https://docs.astral.sh/ruff/rules/#isort-i "UP", # pyupgrade - https://docs.astral.sh/ruff/rules/#pyupgrade-up ] - -[tool.ruff.lint.per-file-ignores] -# Ignore variable names inside the template because ruff doesn't -# work well with jinja templating. Any violations of N rules inside -# the template are caught by the tests. -"template/**/*" = ["N"] From 7073cbaae77c4f11b173b047c9826ef4276a52a2 Mon Sep 17 00:00:00 2001 From: Tom Cobb Date: Mon, 22 Sep 2025 16:26:55 +0000 Subject: [PATCH 28/34] Add docs --- .pre-commit-config.yaml | 6 +- README.md | 2 +- docs/explanations/decisions/0023-uv.md | 23 ++++++ docs/how-to/lint.md | 8 +- docs/how-to/lock-requirements.md | 57 ++++++-------- docs/how-to/update-template.md | 2 +- uv.lock | 100 ++++++++++++------------- 7 files changed, 103 insertions(+), 95 deletions(-) create mode 100644 docs/explanations/decisions/0023-uv.md diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 857052c3..cc1923c4 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -27,9 +27,9 @@ repos: require_serial: true # Make sure lock file satisfies dependencies in pyproject.toml. - - id: uv-lock - name: update uv.lock + - id: uv-sync + name: update uv.lock and venv pass_filenames: false language: system - entry: uv lock + entry: uv sync files: ^(uv\.lock|pyproject\.toml)$ diff --git a/README.md b/README.md index 1bdf7d58..96f72ded 100644 --- a/README.md +++ b/README.md @@ -44,7 +44,7 @@ git init --initial-branch=main /path/to/my-project copier copy https://github.com/DiamondLightSource/python-copier-template.git $_ ``` -You can also use it via `pipx run copier` if you have that installed. +You can also use it via `uvx copier` if you have `uv` installed. diff --git a/docs/explanations/decisions/0023-uv.md b/docs/explanations/decisions/0023-uv.md new file mode 100644 index 00000000..3a128111 --- /dev/null +++ b/docs/explanations/decisions/0023-uv.md @@ -0,0 +1,23 @@ +# 23. Adopt uv + +Date: 2025-09-22 + +## Status + +Accepted + +## Context + +[`uv`](https://docs.astral.sh/uv/) appears to be gaining a critical mass of adoption, and adopting the project flow would bring some benefits: +- Much faster venv creation times +- A native lockfile implementation +- A single base image that can install multiple pythons +- Which would allow us to make a single devcontainer base with our feature built in, which would speed up the devcontainer creation time + +## Decision + +We will adopt this flow. + +## Consequences + +Docs will need to be updated, especially around lockfile support. Commands will need to be updated slightly for the new version of tox. Work on `renovate` will need to follow as `dependabot` does not support the uv lockfile. diff --git a/docs/how-to/lint.md b/docs/how-to/lint.md index 3a706436..140efa97 100644 --- a/docs/how-to/lint.md +++ b/docs/how-to/lint.md @@ -10,14 +10,14 @@ You can run the above checks on all files with this command: $ tox -e pre-commit ``` -Or you can install a pre-commit hook that will run each time you do a `git commit` on just the files that have changed: +The devcontainer will also install a pre-commit hook that will run each time you do a `git commit` on just the files that have changed. + +If you want to commit with a failing pre-commit check then you have to: ``` -$ pre-commit install +$ git commit --no-verify ``` -It is also possible to [automatically enable pre-commit on cloned repositories](https://pre-commit.com/#automatically-enabling-pre-commit-on-repositories). This will result in pre-commits being enabled on every repo your user clones from now on. - ## Fixing issues The typical workflow is: diff --git a/docs/how-to/lock-requirements.md b/docs/how-to/lock-requirements.md index 1e72899f..52704b52 100644 --- a/docs/how-to/lock-requirements.md +++ b/docs/how-to/lock-requirements.md @@ -2,48 +2,33 @@ ## Introduction -By design this project only defines dependencies in one place, i.e. in the `requires` table in `pyproject.toml`. +Since the move to `uv`, this project natively supports a lockfile. This is a set of "known good" dependencies that the tests are run against, and will be used to create a container if one is built. -In the `requires` table it is possible to pin versions of some dependencies as needed. For library projects it is best to leave pinning to a minimum so that your library can be used by the widest range of applications. +## Specifying dependencies -When CI builds the project it will use the latest compatible set of dependencies available (after applying your pins and any dependencies' pins). +The source of dependencies is the project's `pyproject.toml`. They can come from: +- Project dependencies (from `[project]` `dependencies =`) +- Dev dependencies (from `[dependency-groups]` `dev =`) +- Transitive dependencies (child dependencies of the above) -This approach means that there is a possibility that a future build may break because an updated release of a dependency has made a breaking change. - -The correct way to fix such an issue is to work out the minimum pinning in `requires` that will resolve the problem. However this can be quite hard to do and may be time consuming when simply trying to release a minor update. - -For this reason we provide a mechanism for locking all dependencies to the same version as a previous successful release. This is a quick fix that should guarantee a successful CI build. - -## Finding the lock files - -Every release of the project will have a set of requirements files published as release assets. - -For example take a look at the release page for python-copier-template [here](https://github.com/DiamondLightSource/python-copier-template/releases/tag/1.1.0) - -There is a single `dev-requirements.txt` file showing as an asset on the release. This has been created using `pip freeze --exclude-editable` on a successful test run using the same version of python as the devcontainer, and will contain a full list of the dependencies and sub-dependencies with pinned versions. You can download this file by clicking on it. - -## Applying the lock file - -To apply a lockfile: - -- copy the requirements file you have downloaded to the root of your repository -- commit it into the repo -- push the changes - -The CI looks for a `dev-requirements.txt` in the root and will pass it to pip as a constraint when installing the dev environment. If a package is required to be installed by `pyproject.toml` then `pip` will use the version specified in `dev-requirements.txt`. +Dependencies are loosely specified in `pyproject.toml`, like `sphinx-autobuild` or `pydata-sphinx-theme>=0.12`. They should state a minimum version if you are using features that are added in a specific version. There should be no upper bound by default, only insert one if an upstream release of a dependency breaks your code, and you don't have time to fix it immediately. ## Updating the lockfile -1. Open the repo in a devcontainer -1. Delete dev-requirements.txt -1. Restart your dev container -1. Check the tests run -1. Then run `pip freeze --exclude-editable > dev-requirements.txt` -1. Check the new file into Git -1. Push and merge the changes +When you have updated `pyproject.toml` then run: +``` +$ uv sync +``` + +This will ensure that any new dependencies you add will be placed in the lockfile, and your venv updated to match. It will *not* update any existing dependencies, unless `pyproject.toml` requires a later version. -## Removing dependency locking from CI +This command will be run by [pre-commit](./lint) during a `git commit` and by CI. -Once the reasons for locking the build have been resolved it is a good idea to go back to an unlocked build. This is because you get an early indication of any incoming problems. +To update all dependencies to their latest versions run: +``` +uv sync --upgrade +``` -To restore unlocked builds in CI simply remove `dev-requirements.txt` from the root of the repo and push. +```{seealso} +[The uv docs on locking and syncing](https://docs.astral.sh/uv/concepts/projects/sync) +``` diff --git a/docs/how-to/update-template.md b/docs/how-to/update-template.md index 5bd1de0f..19df87d1 100644 --- a/docs/how-to/update-template.md +++ b/docs/how-to/update-template.md @@ -26,7 +26,7 @@ The following steps are recommended to update your project, especially for infre - for devcontainers - `ctrl+shift+p` -> `Remote-Containers: Rebuild Without Cache and Reopen in Container` - for local development - - `pip install -e .[dev] --force-reinstall` + - `uv sync` - validate your project against the latest tools - `tox -p` - fix issues found by the above diff --git a/uv.lock b/uv.lock index d80ba71e..2d4590e3 100644 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--locked tox -e ${{ inputs.tox }} From 2555a8adb1ec0a0c6ce499e956adbd0379699114 Mon Sep 17 00:00:00 2001 From: Tom Cobb Date: Wed, 24 Sep 2025 09:24:34 +0000 Subject: [PATCH 30/34] Address review comments --- Dockerfile | 3 ++- template/Dockerfile.jinja | 5 +++-- tests/test_example.py | 5 +++-- 3 files changed, 8 insertions(+), 5 deletions(-) diff --git a/Dockerfile b/Dockerfile index 30fa513a..e314a56d 100644 --- a/Dockerfile +++ b/Dockerfile @@ -4,4 +4,5 @@ FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz + graphviz && \ + apt-get dist-clean diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index ec3a24ae..d90d627f 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -4,7 +4,8 @@ FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz{% if docker %} + graphviz && \ + apt-get dist-clean{% if docker %} # The build stage installs the context into the venv FROM developer AS build @@ -47,7 +48,7 @@ FROM ubuntu:noble AS runtime # Add apt-get system dependecies for runtime here if needed # RUN apt-get update && apt-get install -y --no-install-recommends \ # some-library \ -# && rm -rf /var/lib/apt/lists/* +# && apt-get dist-clean # Copy the environment, but not the source code COPY --from=build /app/.venv /app/.venv diff --git a/tests/test_example.py b/tests/test_example.py index 7e211369..cdc6156f 100644 --- a/tests/test_example.py +++ b/tests/test_example.py @@ -1,6 +1,7 @@ import functools import shlex import subprocess +from collections.abc import Callable from pathlib import Path import pytest @@ -24,7 +25,7 @@ def copy_project(project_path: Path, **kwargs): run_pipe("git add .", cwd=str(project_path)) -def run_pipe(cmd: str, cwd=None): +def run_pipe(cmd: str, cwd=None) -> str: sp = subprocess.run( shlex.split(cmd), stdout=subprocess.PIPE, @@ -36,7 +37,7 @@ def run_pipe(cmd: str, cwd=None): return output -def make_venv(project_path: Path) -> callable: +def make_venv(project_path: Path) -> Callable[[str], str]: venv_path = project_path / ".venv" run = functools.partial(run_pipe, cwd=str(project_path)) run("uv sync") # Create a lockfile and install packages From 64dcd6bef4aee5a72ffde5fb0e8c9d1f3252e137 Mon Sep 17 00:00:00 2001 From: Tom Cobb Date: Wed, 24 Sep 2025 13:07:49 +0000 Subject: [PATCH 31/34] Move back to tox TOML format But add extra docs-autobuild target --- .github/workflows/periodic.yml | 2 +- docs/how-to/build-docs.md | 8 +-- pyproject.toml | 69 ++++++++++++++++++++------ template/pyproject.toml.jinja | 91 ++++++++++++++++++++++++++++------ tests/test_example.py | 2 +- 5 files changed, 138 insertions(+), 34 deletions(-) diff --git a/.github/workflows/periodic.yml b/.github/workflows/periodic.yml index 67060640..18b419c5 100644 --- a/.github/workflows/periodic.yml +++ b/.github/workflows/periodic.yml @@ -10,4 +10,4 @@ jobs: linkcheck: uses: ./.github/workflows/_tox.yml with: - tox: docs -- build -b linkcheck + tox: docs -- -b linkcheck diff --git a/docs/how-to/build-docs.md b/docs/how-to/build-docs.md index a638b215..a943dad2 100644 --- a/docs/how-to/build-docs.md +++ b/docs/how-to/build-docs.md @@ -20,10 +20,10 @@ $ firefox build/html/index.html ## Autobuild -You can also run an autobuild process, which will watch your `docs` directory for changes and rebuild whenever it sees changes, reloading any browsers watching the pages: +You can also run an autobuild process, which will watch your `docs` and `src` directories for changes and rebuild whenever it sees changes, reloading any browsers watching the pages: ``` -$ tox -e docs -- autobuild +$ tox -e docs-autobuild ``` You can view the pages at localhost: @@ -32,8 +32,8 @@ You can view the pages at localhost: $ firefox http://localhost:8000 ``` -If you are making changes to source code too, you can tell it to watch changes in this directory too: +If you want to watch additional directories for changes you can pass these as argument to tox: ``` -$ tox -e docs -- autobuild --watch src +$ tox -e docs-autobuild -- --watch tests ``` diff --git a/pyproject.toml b/pyproject.toml index cf487adc..52dbee00 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -31,21 +31,62 @@ addopts = """ # Doctest python code in docs, python code in src docstrings, test functions in tests testpaths = "tests" -# tox must be configured via an embedded ini string to support -# using positional args as parts of command arguments [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist=True -env_list = pre-commit,tests,docs - -[testenv:{pre-commit,tests,docs}] -passenv = * -commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - tests: pytest {posargs} - docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -""" +skipsdist = true +# envs to runs automatically with tox -p +env_list = ["pre-commit", "tests", "docs"] + +[tool.tox.env_run_base] +# Pass all environment variables to the test environments +passenv = ["*"] + +[tool.tox.env.pre-commit] +description = "Run pre-commit on all files" +commands = [ + [ + "pre-commit", + "run", + "--all-files", + "--show-diff-on-failure", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.tests] +description = "Run tests" +commands = [["pytest", { replace = "posargs", default = [], extend = true }]] + +[tool.tox.env.docs] +description = "Run docs build with clean environment" +commands = [ + [ + "sphinx-build", + "--fresh-env", + "--show-traceback", + "--fail-on-warning", + "--keep-going", + "docs", + "build/html", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.docs-autobuild] +description = "Run docs with autobuild on change" +commands = [ + [ + "sphinx-autobuild", + "--show-traceback", + "--watch", + "README.md", + "docs", + "build/html", + { replace = "posargs", default = [ + ], extend = true }, + ], +] [tool.ruff] src = ["src", "tests"] diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index 1617ac05..4e9d351c 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -76,23 +76,86 @@ data_file = "/tmp/{{ package_name }}.coverage" # Tests are run from installed location, map back to the src directory source = ["src", "**/site-packages/"] -# tox must be configured via an embedded ini string to support -# using positional args as parts of command arguments [tool.tox] -legacy_tox_ini = """ -[tox] -skipsdist = True -env_list = pre-commit,type-checking,tests{% if sphinx %},docs{% endif %} +skipsdist = true +# envs to runs automatically with tox -p +env_list = ["pre-commit", "type-checking", "tests"{% if sphinx %}, "docs"{% endif %}] -[testenv:{pre-commit,type-checking,tests{% if sphinx %},docs{% endif %}}] -passenv = * -commands = - pre-commit: pre-commit run --all-files --show-diff-on-failure {posargs} - type-checking: {{ type_checker }} src tests {posargs} - tests: pytest --cov={{ package_name }} --cov-report term --cov-report xml:cov.xml {posargs} -{% if sphinx %} docs: sphinx-{posargs:build -EW --keep-going} -T docs build/html -{% endif %}""" +[tool.tox.env_run_base] +# Pass all environment variables to the test environments +passenv = ["*"] +[tool.tox.env.pre-commit] +description = "Run pre-commit on all files" +commands = [ + [ + "pre-commit", + "run", + "--all-files", + "--show-diff-on-failure", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.type-checking] +description = "Run {{ type_checker }}" +commands = [ + [ + "{{ type_checker }}", + "src", + "tests", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.tests] +description = "Run tests with coverage" +commands = [ + [ + "pytest", + "--cov={{ package_name }}", + "--cov-report", + "term", + "--cov-report", + "xml:cov.xml", + { replace = "posargs", default = [ + ], extend = true }, + ], +] +{% if sphinx %} +[tool.tox.env.docs] +description = "Run docs build with clean environment" +commands = [ + [ + "sphinx-build", + "--fresh-env", + "--show-traceback", + "--fail-on-warning", + "--keep-going", + "docs", + "build/html", + { replace = "posargs", default = [ + ], extend = true }, + ], +] + +[tool.tox.env.docs-autobuild] +description = "Run docs with autobuild on change" +commands = [ + [ + "sphinx-autobuild", + "--show-traceback", + "--watch", + "README.md", + "docs", + "build/html", + { replace = "posargs", default = [ + ], extend = true }, + ], +] +{% endif %} [tool.ruff] src = ["src", "tests"] line-length = 88 diff --git a/tests/test_example.py b/tests/test_example.py index cdc6156f..f7ba96a1 100644 --- a/tests/test_example.py +++ b/tests/test_example.py @@ -64,7 +64,7 @@ def test_template_defaults(tmp_path: Path): if not run_pipe("git tag --points-at HEAD"): # Only run linkcheck if not on a tag, as the CI might not have pushed # the docs for this tag yet, so we will fail - run(".venv/bin/tox -e docs -- build -b linkcheck") + run(".venv/bin/tox -e docs -- -b linkcheck") run("uvx --from build pyproject-build") run("uvx twine check --strict dist/*") From f69d899023280ab5d8f8a44642ed7a65c886b6dc Mon Sep 17 00:00:00 2001 From: Tom Cobb Date: Wed, 24 Sep 2025 13:08:55 +0000 Subject: [PATCH 32/34] Don't autoforward ports in devcontainer Otherwise docs autobuild doesn't work as the forward kicks in before sphinx can start the server --- .devcontainer/devcontainer.json | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json index 9a414138..84ba5d6c 100644 --- a/.devcontainer/devcontainer.json +++ b/.devcontainer/devcontainer.json @@ -19,7 +19,8 @@ "settings": { "python.defaultInterpreterPath": "/workspaces/${localWorkspaceFolderBasename}/.venv/bin/python", "python.terminal.activateEnvInCurrentTerminal": false, - "python.terminal.activateEnvironment": false + "python.terminal.activateEnvironment": false, + "remote.autoForwardPorts": false }, // Add the IDs of extensions you want installed when the container is created. "extensions": [ From 5a6a04710f76630bf840866048bc4aa9d912875b Mon Sep 17 00:00:00 2001 From: Tom Cobb Date: Wed, 24 Sep 2025 13:38:40 +0000 Subject: [PATCH 33/34] Tidy diff --- .pre-commit-config.yaml | 3 --- Dockerfile | 4 ++-- template/Dockerfile.jinja | 4 ++-- 3 files changed, 4 insertions(+), 7 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index cc1923c4..ef75b79c 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -10,7 +10,6 @@ repos: - repo: local hooks: - # Run the linter. - id: ruff name: lint with ruff language: system @@ -18,7 +17,6 @@ repos: types: [python] require_serial: true - # Run the formatter. - id: ruff-format name: format with ruff language: system @@ -26,7 +24,6 @@ repos: types: [python] require_serial: true - # Make sure lock file satisfies dependencies in pyproject.toml. - id: uv-sync name: update uv.lock and venv pass_filenames: false diff --git a/Dockerfile b/Dockerfile index e314a56d..dd7f8c3a 100644 --- a/Dockerfile +++ b/Dockerfile @@ -4,5 +4,5 @@ FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz && \ - apt-get dist-clean + graphviz \ + && apt-get dist-clean diff --git a/template/Dockerfile.jinja b/template/Dockerfile.jinja index d90d627f..dd522313 100644 --- a/template/Dockerfile.jinja +++ b/template/Dockerfile.jinja @@ -4,8 +4,8 @@ FROM ghcr.io/diamondlightsource/ubuntu-devcontainer:noble AS developer # Add any system dependencies for the developer/build environment here RUN apt-get update && apt-get install -y --no-install-recommends \ - graphviz && \ - apt-get dist-clean{% if docker %} + graphviz \ + && apt-get dist-clean{% if docker %} # The build stage installs the context into the venv FROM developer AS build From 07a92bda271801fdab7213fdf26a503585ed28ae Mon Sep 17 00:00:00 2001 From: Ollie Copping Date: Thu, 25 Sep 2025 08:14:04 +0000 Subject: [PATCH 34/34] Remove pytest version pinning from template pyproject.toml --- template/pyproject.toml.jinja | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/template/pyproject.toml.jinja b/template/pyproject.toml.jinja index 4e9d351c..1d0cdd49 100644 --- a/template/pyproject.toml.jinja +++ b/template/pyproject.toml.jinja @@ -26,7 +26,7 @@ dev = [ {% endif %}"pre-commit", {% if sphinx %}"pydata-sphinx-theme>=0.12", {% endif %}{% if type_checker=="pyright" %}"pyright", - {% endif %}"pytest>8.3.4", + {% endif %}"pytest", "pytest-cov", "ruff", {% if sphinx %}"sphinx-autobuild",