Update README; rename io.kjaer.compiletime package to fix error importing from sbt console

EmergentOrder · EmergentOrder · commit 4a24d1db5e2b · 2022-12-22T12:17:05.000-05:00
diff --git a/README.md b/README.md
@@ -24,9 +24,10 @@ First we create an "image" tensor composed entirely of pixel value [42](https://
 ```scala
 import java.nio.file.{Files, Paths}
 import org.emergentorder.onnx.Tensors._
+import org.emergentorder.onnx.Tensors.Tensor._
 import org.emergentorder.onnx.backends._
 import org.emergentorder.compiletime._
-import io.kjaer.compiletime._
+import org.emergentorder.io.kjaer.compiletime._
 
 val squeezenetBytes = Files.readAllBytes(Paths.get("squeezenet1.0-12.onnx"))
 val squeezenet = new ORTModelBackend(squeezenetBytes)
@@ -57,16 +58,18 @@ val out = squeezenet.fullModel[Float,
 // val out:
 //  Tensor[Float,("ImageNetClassification", 
 //                "Batch" ##: "Class" ##: TSNil,
-//                1 #: 1000 #: SNil)] = (Array(0.8230729,
+//                1 #: 1000 #: 1 #: 1 SNil)] = IO(...)
 // ...
 
 //The output shape
-out.shape
-// val res0: Array[Int] = Array(1, 1000)
+out.shape.unsafeRunSync()
+// val res0: Array[Int] = Array(1, 1000, 1, 1)
 
+val data = out.data.unsafeRunSync()
+// val data: Array[Float] = Array(1.786191E-4, ...)
 
 //The highest scoring and thus highest probability (predicted) class
-out.data.indices.maxBy(out.data)
+data.indices.maxBy(data)
 // val res1: Int = 549
 ```
 
diff --git a/backends/.js/src/main/scala/ORTOperatorBackend.scala b/backends/.js/src/main/scala/ORTOperatorBackend.scala
@@ -28,7 +28,7 @@ import org.emergentorder.onnx.Tensors._
 import org.emergentorder.onnx.Tensors.Tensor._
 import org.emergentorder.compiletime._
 import onnxruntimeCommon.inferenceSessionMod.InferenceSession
-import io.kjaer.compiletime._
+import org.emergentorder.io.kjaer.compiletime._
 
 //TODO: fix redundant computation due to cats-effect on the JS side
 //Still happening, though partially fixed by changes in core
diff --git a/backends/.js/src/main/scala/ORTWebModelBackend.scala b/backends/.js/src/main/scala/ORTWebModelBackend.scala
@@ -15,7 +15,7 @@ import org.emergentorder.onnx._
 import org.emergentorder.onnx.Tensors._
 import org.emergentorder.onnx.Tensors.Tensor._
 import org.emergentorder.compiletime._
-import io.kjaer.compiletime._
+import org.emergentorder.io.kjaer.compiletime._
 
 import ORTTensorUtils._
 
diff --git a/backends/.js/src/test/scala/SqueezeNetTest.scala b/backends/.js/src/test/scala/SqueezeNetTest.scala
@@ -6,7 +6,7 @@ import org.emergentorder.onnx.Tensors._
 import org.emergentorder.onnx.Tensors.Tensor._
 import org.emergentorder.onnx.backends._
 import org.emergentorder.compiletime._
-import io.kjaer.compiletime._
+import org.emergentorder.io.kjaer.compiletime._
 import org.emergentorder.onnx.onnxruntimeWeb.mod.{InferenceSession => OrtSession}
 import cats.effect.IO
 
diff --git a/backends/.jvm/src/main/scala/NCF.scala b/backends/.jvm/src/main/scala/NCF.scala
@@ -13,7 +13,7 @@ import spire.math.Numeric
 import scala.language.higherKinds
 import scala.io.Source
 import org.emergentorder.compiletime.*
-import io.kjaer.compiletime.*
+import org.emergentorder.io.kjaer.compiletime.*
 import cats.effect.IO
 
 //TODO: Add changes to generator; Generate both full model and layerwise programs each time
diff --git a/backends/.jvm/src/main/scala/ORTModelBackend.scala b/backends/.jvm/src/main/scala/ORTModelBackend.scala
@@ -16,7 +16,7 @@ import org.emergentorder.onnx.*
 import org.emergentorder.onnx.Tensors.*
 import org.emergentorder.onnx.Tensors.Tensor.*
 import org.emergentorder.compiletime.*
-import io.kjaer.compiletime.*
+import org.emergentorder.io.kjaer.compiletime.*
 
 import ORTTensorUtils.*
 
diff --git a/backends/.jvm/src/main/scala/ORTOperatorBackend.scala b/backends/.jvm/src/main/scala/ORTOperatorBackend.scala
@@ -11,7 +11,7 @@ import org.emergentorder.onnx.*
 import org.emergentorder.onnx.Tensors.*
 import org.emergentorder.onnx.Tensors.Tensor.*
 import org.emergentorder.compiletime.*
-import io.kjaer.compiletime.*
+import org.emergentorder.io.kjaer.compiletime.*
 import onnx.onnx.*
 
 import cats.implicits.*
diff --git a/backends/.jvm/src/test/scala/BertTokenizerTest.scala b/backends/.jvm/src/test/scala/BertTokenizerTest.scala
@@ -9,7 +9,7 @@ import org.emergentorder.onnx.Tensors.*
 import org.emergentorder.onnx.Tensors.Tensor.*
 import org.emergentorder.onnx.backends.*
 import org.emergentorder.compiletime.*
-import io.kjaer.compiletime.*
+import org.emergentorder.io.kjaer.compiletime.*
 
 import org.scalatest.flatspec.AnyFlatSpec
 import org.scalatest.freespec.AsyncFreeSpec
diff --git a/backends/.jvm/src/test/scala/SqueezeNetTest.scala b/backends/.jvm/src/test/scala/SqueezeNetTest.scala
@@ -9,7 +9,7 @@ import org.emergentorder.onnx.Tensors.*
 import org.emergentorder.onnx.Tensors.Tensor.*
 import org.emergentorder.onnx.backends.*
 import org.emergentorder.compiletime.*
-import io.kjaer.compiletime.*
+import org.emergentorder.io.kjaer.compiletime.*
 
 import org.scalatest.flatspec.AnyFlatSpec
 import org.scalatest.freespec.AsyncFreeSpec
@@ -23,7 +23,7 @@ class ONNXScalaSpec extends AsyncFreeSpec with AsyncIOSpec with Matchers {
    ) #> new File("squeezenet1.0-12.onnx") !!
 
    "SqueezeNet ONNX-Scala model should predict dummy image class" in {
-      val squeezenetBytes = Files.readAllBytes(Paths.get("squeezenet1.0-12.onnx"))
+      val squeezenetBytes = Files.readAllBytes(Paths.get("squeezenet1.0-12.onnx")) //.quant.onnx"))
       val squeezenet      = new ORTModelBackend(squeezenetBytes)
       val data            = Array.fill(1 * 3 * 224 * 224) { 42f }
       // In NCHW tensor image format
diff --git a/backends/.native/src/main/scala/ORTNativeOperatorBackend.scala b/backends/.native/src/main/scala/ORTNativeOperatorBackend.scala
@@ -10,7 +10,7 @@ import org.emergentorder.onnx._
 import org.emergentorder.onnx.Tensors._
 import org.emergentorder.onnx.Tensors.Tensor._
 import org.emergentorder.compiletime._
-import io.kjaer.compiletime._
+import org.emergentorder.io.kjaer.compiletime._
 
 trait ORTNativeOperatorBackend {
 
diff --git a/build.sbt b/build.sbt
@@ -89,11 +89,14 @@ lazy val backends = (crossProject(JSPlatform, JVMPlatform, NativePlatform)
      startWebpackDevServer / version                   := "4.11.1",
      scalaJSUseMainModuleInitializer                   := true, // , //Testing
      Compile / npmDependencies += "onnxruntime-web"    -> "1.13.1",
+      //ORT web and node are interchangeable, given minor package name changes, and node offers a significant speed-up (at the cost of working on the web)
+ //     Compile / npmDependencies += "onnxruntime-node"    -> "1.13.1",
      Compile / npmDependencies += "onnxruntime-common" -> "1.13.1",
      Compile / npmDependencies += "typescript"         -> "4.8.4",
      libraryDependencies += "org.typelevel" %%% "cats-effect-testing-scalatest" % "1.5.0" % Test,
      stOutputPackage                         := "org.emergentorder.onnx",
      stShortModuleNames                      := true,
+     Compile /packageDoc / publishArtifact := false, //This is inordinately slow, only publish doc on release
      scalaJSStage                            := FullOptStage,
      scalaJSLinkerConfig ~= (_.withESFeatures(
        _.withESVersion(org.scalajs.linker.interface.ESVersion.ES2021)
diff --git a/common/src/main/scala/TensorShapeDenotation.scala b/common/src/main/scala/TensorShapeDenotation.scala
@@ -4,9 +4,9 @@ package org.emergentorder.compiletime
 
 import scala.compiletime.ops.int.{S, +, <, <=, *}
 import scala.compiletime.ops.boolean.&&
-import io.kjaer.compiletime.Index
-import io.kjaer.compiletime.Indices
-import io.kjaer.compiletime.INil
+import org.emergentorder.io.kjaer.compiletime.Index
+import org.emergentorder.io.kjaer.compiletime.Indices
+import org.emergentorder.io.kjaer.compiletime.INil
 
 type DimensionDenotation = String & Singleton
 
diff --git a/common/src/main/scala/io/kjaer/compiletime/Indices.scala b/common/src/main/scala/io/kjaer/compiletime/Indices.scala
@@ -1,5 +1,5 @@
 //Author: Maxime Kjaer, taken from tf-dotty
-package io.kjaer.compiletime
+package org.emergentorder.io.kjaer.compiletime
 
 import scala.compiletime.ops.string.+
 import scala.compiletime.ops.int
@@ -8,7 +8,7 @@ type Index = Int & Singleton
 
 sealed trait Indices {
    def :::[H <: Index, This >: this.type <: Indices](head: H): H ::: This =
-      io.kjaer.compiletime.:::(head, this)
+      org.emergentorder.io.kjaer.compiletime.:::(head, this)
 
    def indices: Seq[Int] = this match {
       case INil          => Nil
diff --git a/common/src/main/scala/io/kjaer/compiletime/IndicesOf.scala b/common/src/main/scala/io/kjaer/compiletime/IndicesOf.scala
@@ -1,5 +1,5 @@
 //Author: Maxime Kjaer, taken from tf-dotty
-package io.kjaer.compiletime
+package org.emergentorder.io.kjaer.compiletime
 
 /** Type-class used to materialize the singleton type of an [[Indices]].
   *
diff --git a/common/src/main/scala/io/kjaer/compiletime/Shape.scala b/common/src/main/scala/io/kjaer/compiletime/Shape.scala
@@ -1,5 +1,5 @@
 //Author: Maxime Kjaer, taken from tf-dotty
-package io.kjaer.compiletime
+package org.emergentorder.io.kjaer.compiletime
 
 import scala.compiletime.ops.int.{S, +, <, <=, *}
 import scala.compiletime.ops.boolean.&&
@@ -11,7 +11,7 @@ sealed trait Shape extends Product with Serializable {
 
    /** Prepend the head to this */
    def #:[H <: Dimension, This >: this.type <: Shape](head: H): H #: This =
-      io.kjaer.compiletime.#:(head, this)
+      org.emergentorder.io.kjaer.compiletime.#:(head, this)
 
    /** Concat with another shape * */
    def ++(that: Shape): this.type `Concat` that.type = Shape.concat(this, that)
diff --git a/common/src/main/scala/io/kjaer/compiletime/ShapeOf.scala b/common/src/main/scala/io/kjaer/compiletime/ShapeOf.scala
@@ -1,5 +1,5 @@
 //Author: Maxime Kjaer, taken from tf-dotty
-package io.kjaer.compiletime
+package org.emergentorder.io.kjaer.compiletime
 
 /** Type-class used to materialize the singleton type of a [[Shape]].
   *
diff --git a/common/src/main/scala/io/kjaer/compiletime/dependent.scala b/common/src/main/scala/io/kjaer/compiletime/dependent.scala
@@ -1,5 +1,5 @@
 //Author: Maxime Kjaer, taken from tf-dotty
-package io.kjaer.compiletime
+package org.emergentorder.io.kjaer.compiletime
 
 import scala.compiletime.ops.int.*
 
diff --git a/core/src/main/scala/ONNX.scala b/core/src/main/scala/ONNX.scala
@@ -1500,6 +1500,9 @@ package object onnx {
       }
    }
 
+   //TODO: move "axes" from attributes to inputs on the rest of the Reduce ops,
+   //as done below with ReduceSum (when updating to opset 18)
+   //
    // TODO: new attr : noop_with_empty_axes
    trait ReduceSumV13 extends Operator {
       def ReduceSumV13[
diff --git a/core/src/main/scala/ONNXBytesDataSource.scala b/core/src/main/scala/ONNXBytesDataSource.scala
@@ -4,7 +4,7 @@ import spire.math.Numeric
 import org.emergentorder.onnx.*
 import org.emergentorder.onnx.Tensors.*
 import org.emergentorder.compiletime.*
-import io.kjaer.compiletime.*
+import org.emergentorder.io.kjaer.compiletime.*
 
 class ONNXBytesDataSource(onnxBytes: Array[Byte]) extends DataSource {
 
diff --git a/core/src/main/scala/OpToONNXBytesConverter.scala b/core/src/main/scala/OpToONNXBytesConverter.scala
@@ -15,7 +15,7 @@ import onnx.onnx.TensorProto.DataType.*
 
 import cats.effect.IO
 import cats.implicits.*
-import io.kjaer.compiletime.Shape
+import org.emergentorder.io.kjaer.compiletime.Shape
 import org.emergentorder.compiletime.*
 import org.emergentorder.onnx.Tensors.*
 import org.emergentorder.onnx.Tensors.Tensor.*
diff --git a/core/src/main/scala/Tensors.scala b/core/src/main/scala/Tensors.scala
@@ -6,8 +6,8 @@ import spire.math.UInt
 import spire.math.ULong
 import spire.math.Complex
 import spire.math.Numeric
-import io.kjaer.compiletime.*
-import io.kjaer.compiletime.Shape.*
+import org.emergentorder.io.kjaer.compiletime.*
+import org.emergentorder.io.kjaer.compiletime.Shape.*
 import scala.compiletime.ops.int.*
 
 import cats.effect.IO
diff --git a/get_models.sh b/get_models.sh
@@ -1,2 +1,4 @@
 curl -O "https://media.githubusercontent.com/media/onnx/models/main/vision/classification/squeezenet/model/squeezenet1.0-12.onnx"
 curl -o absnet.onnx "https://raw.githubusercontent.com/onnx/onnx/master/onnx/backend/test/data/node/test_abs/model.onnx"
+
+#TODO: add bert tokenizer here
diff --git a/project/plugins.sbt b/project/plugins.sbt
@@ -1,3 +1,4 @@
+addDependencyTreePlugin
 addSbtPlugin("ch.epfl.scala"      % "sbt-version-policy"            % "2.1.0")
 addSbtPlugin("org.portable-scala" % "sbt-scalajs-crossproject"      % "1.2.0")
 addSbtPlugin("org.portable-scala" % "sbt-scala-native-crossproject" % "1.2.0")
