refactor: Consolidate shared package versions for spack.yaml files (#309)

* Update uberenv hash with version and default changes

* Change include path, add missing dependencies for spack bootstrap now

* Fix shared hypre version

* update lc build scripts to change queue

---------

Co-authored-by: Randolph Settgast <settgast1@llnl.gov>

Author: bmhan12

docker/Stanford/Dockerfile

@@ -23,6 +23,7 @@ RUN yum install -y \
     # xz \
     unzip \
     bzip2 \
+    gnupg \
     && pip3 install virtualenv
 
 # Set locale to bypass ascii codec decode error

docker/TotalEnergies/Dockerfile

@@ -22,6 +22,7 @@ RUN yum install --disablerepo=intel-mkl-repo -y \
     # xz \
     unzip \
     bzip2 \
+    gnupg2 \
     && pip3 install virtualenv
 
 # Install clingo for Spack

docker/TotalEnergies/Pangea3.Dockerfile

@@ -19,6 +19,7 @@ RUN dnf clean all && \
         gettext-devel \
         libtool \
         bzip2 \
+        gnupg2 \
         unzip
 
 # All the environment variables defined in this Dockerfile

docker/TotalEnergies/pecan.Dockerfile

@@ -34,6 +34,7 @@ RUN yum install -y \
     gcc-c++ \
     wget \
     bzip2 \
+    gnupg \
     zlib-devel
 
 WORKDIR /tmp/src

docker/pangea-spack.yaml

@@ -12,6 +12,11 @@ spack:
   # Regular TPLs do not need views
   view: false
 
+  # Include shared variants and versions
+  include:
+  - ../defaults.yaml
+  - ../versions.yaml
+
   compilers::
   - compiler:
       spec: gcc@=9.4.0
@@ -38,44 +43,6 @@ spack:
         lapack: [openblas]
         mpi: [openmpi]
 
-
-    # v0.6.2
-    blt:
-      require: "@git.9ff77344f0b2a6ee345e452bddd6bfd46cbbfa35=develop"
-
-    hypre:
-      require: "@git.907a2d07b64fe47bdde4540c54665c83ced83a2c"
-
-    # v2025.0.3.0
-    chai:
-      require: "@git.4b9060b18b9bec1167026cfb3132bd540c4bd56b=develop"
-
-    # v2025.0.3.0
-    umpire:
-      require: "@git.1ed0669c57f041baa1f1070693991c3a7a43e7ee=develop"
-
-    # v2025.0.3.0
-    raja:
-      require: "@git.1d70abf171474d331f1409908bdf1b1c3fe19222=develop"
-
-    # v2025.0.3.0
-    camp:
-      require: "@git.ee0a3069a7ae72da8bcea63c06260fad34901d43=main"
-
-    # v2.12.0
-    caliper:
-      require: "@git.287b7f3ad2d12f520aad04268d44f353cd05403c"
-
-    # v0.9.2
-    conduit:
-      require: "@git.ad86e316ad56a75c099d30ca5ce75cff275b5924=develop"
-
-    uncrustify:
-      require: "@git.401a4098bce9dcc47e024987403f2d59d9ba7bd2"
-
-    superlu-dist:
-      require: "@git.0f6efc377df2440c235452d13d28d2c717f832a1"
-
     autoconf:
       externals:
       - spec: autoconf@2.69

docker/pecan-spack.yaml

@@ -12,6 +12,11 @@ spack:
   # Regular TPLs do not need views
   view: false
 
+  # Include shared variants and versions
+  include:
+  - ../defaults.yaml
+  - ../versions.yaml
+
   compilers::
   # Pecan CPU/GPU compiler
   - compiler:
@@ -38,44 +43,6 @@ spack:
         lapack: [intel-mkl]
         mpi: [openmpi]
 
-
-    # v0.6.2
-    blt:
-      require: "@git.9ff77344f0b2a6ee345e452bddd6bfd46cbbfa35=develop"
-
-    hypre:
-      require: "@git.907a2d07b64fe47bdde4540c54665c83ced83a2c"
-
-    # v2025.0.3.0
-    chai:
-      require: "@git.4b9060b18b9bec1167026cfb3132bd540c4bd56b=develop"
-
-    # v2025.0.3.0
-    umpire:
-      require: "@git.1ed0669c57f041baa1f1070693991c3a7a43e7ee=develop"
-
-    # v2025.0.3.0
-    raja:
-      require: "@git.1d70abf171474d331f1409908bdf1b1c3fe19222=develop"
-
-    # v2025.0.3.0
-    camp:
-      require: "@git.ee0a3069a7ae72da8bcea63c06260fad34901d43=main"
-
-    # v2.12.0
-    caliper:
-      require: "@git.287b7f3ad2d12f520aad04268d44f353cd05403c"
-
-    # v0.9.2
-    conduit:
-      require: "@git.ad86e316ad56a75c099d30ca5ce75cff275b5924=develop"
-
-    uncrustify:
-      require: "@git.401a4098bce9dcc47e024987403f2d59d9ba7bd2"
-
-    superlu-dist:
-      require: "@git.0f6efc377df2440c235452d13d28d2c717f832a1"
-
     autoconf:
       version: [2.71]
       buildable: false

docker/rocky-spack.yaml

@@ -12,6 +12,11 @@ spack:
   # Regular TPLs do not need views
   view: false
 
+  # Include shared variants and versions
+  include:
+  - ../defaults.yaml
+  - ../versions.yaml
+
   compilers::
   - compiler:
       extra_rpaths: []
@@ -51,44 +56,6 @@ spack:
         lapack: [netlib-lapack]
         mpi: [openmpi]
 
-
-    # v0.6.2
-    blt:
-      require: "@git.9ff77344f0b2a6ee345e452bddd6bfd46cbbfa35=develop"
-
-    hypre:
-      require: "@git.907a2d07b64fe47bdde4540c54665c83ced83a2c"
-
-    # v2025.0.3.0
-    chai:
-      require: "@git.4b9060b18b9bec1167026cfb3132bd540c4bd56b=develop"
-
-    # v2025.0.3.0
-    umpire:
-      require: "@git.1ed0669c57f041baa1f1070693991c3a7a43e7ee=develop"
-
-    # v2025.0.3.0
-    raja:
-      require: "@git.1d70abf171474d331f1409908bdf1b1c3fe19222=develop"
-
-    # v2025.0.3.0
-    camp:
-      require: "@git.ee0a3069a7ae72da8bcea63c06260fad34901d43=main"
-
-    # v2.12.0
-    caliper:
-      require: "@git.287b7f3ad2d12f520aad04268d44f353cd05403c"
-
-    # v0.9.2
-    conduit:
-      require: "@git.ad86e316ad56a75c099d30ca5ce75cff275b5924=develop"
-
-    uncrustify:
-      require: "@git.401a4098bce9dcc47e024987403f2d59d9ba7bd2"
-
-    superlu-dist:
-      require: "@git.0f6efc377df2440c235452d13d28d2c717f832a1"
-
     autoconf:
       version: [2.71]
       buildable: false

docker/spack.yaml

@@ -12,6 +12,12 @@ spack:
   # Regular TPLs do not need views
   view: false
 
+  # Include shared variants and versions
+  include:
+  - ../defaults.yaml
+  - ../versions.yaml
+
+
   compilers::
   - compiler:
       extra_rpaths: []
@@ -117,44 +123,6 @@ spack:
         lapack: [netlib-lapack]
         mpi: [openmpi]
 
-
-    # v0.6.2
-    blt:
-      require: "@git.9ff77344f0b2a6ee345e452bddd6bfd46cbbfa35=develop"
-
-    hypre:
-      require: "@git.907a2d07b64fe47bdde4540c54665c83ced83a2c"
-
-    # v2025.0.3.0
-    chai:
-      require: "@git.4b9060b18b9bec1167026cfb3132bd540c4bd56b=develop"
-
-    # v2025.0.3.0
-    umpire:
-      require: "@git.1ed0669c57f041baa1f1070693991c3a7a43e7ee=develop"
-
-    # v2025.0.3.0
-    raja:
-      require: "@git.1d70abf171474d331f1409908bdf1b1c3fe19222=develop"
-
-    # v2025.0.3.0
-    camp:
-      require: "@git.ee0a3069a7ae72da8bcea63c06260fad34901d43=main"
-
-    # v2.12.0
-    caliper:
-      require: "@git.287b7f3ad2d12f520aad04268d44f353cd05403c"
-
-    # v0.9.2
-    conduit:
-      require: "@git.ad86e316ad56a75c099d30ca5ce75cff275b5924=develop"
-
-    uncrustify:
-      require: "@git.401a4098bce9dcc47e024987403f2d59d9ba7bd2"
-
-    superlu-dist:
-      require: "@git.0f6efc377df2440c235452d13d28d2c717f832a1"
-
     autoconf:
       version: [2.71]
       buildable: false

docker/stanford-spack.yaml

@@ -13,6 +13,11 @@ spack:
   # Regular TPLs do not need views
   view: false
 
+  # Include shared variants and versions
+  include:
+  - ../defaults.yaml
+  - ../versions.yaml
+
   compilers::
   # Sherlock CPU/GPU Compiler (centos7 x86_64)
   - compiler:
@@ -39,43 +44,6 @@ spack:
         blas: [openblas]
         lapack: [openblas]
 
-    # v0.6.2
-    blt:
-      require: "@git.9ff77344f0b2a6ee345e452bddd6bfd46cbbfa35=develop"
-
-    hypre:
-      require: "@git.907a2d07b64fe47bdde4540c54665c83ced83a2c"
-
-    # v2025.0.3.0
-    chai:
-      require: "@git.4b9060b18b9bec1167026cfb3132bd540c4bd56b=develop"
-
-    # v2025.0.3.0
-    umpire:
-      require: "@git.1ed0669c57f041baa1f1070693991c3a7a43e7ee=develop"
-
-    # v2025.0.3.0
-    raja:
-      require: "@git.1d70abf171474d331f1409908bdf1b1c3fe19222=develop"
-
-    # v2025.0.3.0
-    camp:
-      require: "@git.ee0a3069a7ae72da8bcea63c06260fad34901d43=main"
-
-    # v2.12.0
-    caliper:
-      require: "@git.287b7f3ad2d12f520aad04268d44f353cd05403c"
-
-    # v0.9.2
-    conduit:
-      require: "@git.ad86e316ad56a75c099d30ca5ce75cff275b5924=develop"
-
-    uncrustify:
-      require: "@git.401a4098bce9dcc47e024987403f2d59d9ba7bd2"
-
-    superlu-dist:
-      require: "@git.0f6efc377df2440c235452d13d28d2c717f832a1"
-
     autoconf:
       buildable: false
       externals:

docker/tpl-centos-gcc-cuda.Dockerfile

@@ -48,6 +48,7 @@ RUN yum -y install \
     # xz \
     unzip \
     bzip2 \
+    gnupg \
     && pip3 install virtualenv
 
 # Install clingo for Spack