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Testing clean version of pygeosx install
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‎.github/workflows/docker_build_tpls.yml‎

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Original file line numberDiff line numberDiff line change
@@ -19,68 +19,72 @@ jobs:
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matrix:
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include:
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- name: Ubuntu (20.04, gcc 9.4.0, open-mpi 4.0.3)
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DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9
24-
TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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DOCKER_ROOT_IMAGE: ubuntu:20.04
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DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=9"
27-
RUNS_ON: ubuntu-latest
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- name: Ubuntu (20.04, gcc 10.5.0, open-mpi 4.0.3) - github codespaces
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DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc10
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TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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DOCKER_ROOT_IMAGE: mcr.microsoft.com/vscode/devcontainers/base:ubuntu-20.04
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DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=10"
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RUNS_ON: ubuntu-latest
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- name: Ubuntu (22.04, gcc 11.4.0, open-mpi 4.1.2)
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DOCKER_ROOT_IMAGE: ubuntu:22.04
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DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc11
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TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=11"
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RUNS_ON: ubuntu-latest
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- name: Ubuntu (22.04, gcc 12.3.0, open-mpi 4.1.2)
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DOCKER_ROOT_IMAGE: ubuntu:22.04
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DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc12
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TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=12"
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RUNS_ON: ubuntu-latest
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- name: Ubuntu (22.04, clang 15.0.7 + gcc 11.4.0, open-mpi 4.1.2)
47-
DOCKER_ROOT_IMAGE: ubuntu:22.04
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DOCKER_REPOSITORY: geosx/ubuntu22.04-clang15
49-
TPL_DOCKERFILE: docker/tpl-ubuntu-clang.Dockerfile
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DOCKER_COMPILER_BUILD_ARG: "--build-arg CLANG_MAJOR_VERSION=15 --build-arg GCC_MAJOR_VERSION=11"
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RUNS_ON: ubuntu-latest
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- name: Ubuntu (20.04, clang 10.0.0 + gcc 9.4.0, open-mpi 4.0.3, cuda-11.8.89)
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DOCKER_REPOSITORY: geosx/ubuntu20.04-clang10.0.0-cuda11.8.89
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TPL_DOCKERFILE: docker/tpl-ubuntu-clang-cuda.Dockerfile
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RUNS_ON: ubuntu-latest
22+
# - name: Ubuntu (20.04, gcc 9.4.0, open-mpi 4.0.3)
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# DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc9
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# TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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# DOCKER_ROOT_IMAGE: ubuntu:20.04
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# DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=9"
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# RUNS_ON: ubuntu-latest
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# - name: Ubuntu (20.04, gcc 10.5.0, open-mpi 4.0.3) - github codespaces
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# DOCKER_REPOSITORY: geosx/ubuntu20.04-gcc10
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# TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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# DOCKER_ROOT_IMAGE: mcr.microsoft.com/vscode/devcontainers/base:ubuntu-20.04
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# DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=10"
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# RUNS_ON: ubuntu-latest
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# - name: Ubuntu (22.04, gcc 11.4.0, open-mpi 4.1.2)
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# DOCKER_ROOT_IMAGE: ubuntu:22.04
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# DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc11
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# TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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# DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=11"
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# RUNS_ON: ubuntu-latest
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# - name: Ubuntu (22.04, gcc 12.3.0, open-mpi 4.1.2)
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# DOCKER_ROOT_IMAGE: ubuntu:22.04
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# DOCKER_REPOSITORY: geosx/ubuntu22.04-gcc12
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# TPL_DOCKERFILE: docker/tpl-ubuntu-gcc.Dockerfile
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# DOCKER_COMPILER_BUILD_ARG: "--build-arg GCC_MAJOR_VERSION=12"
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# RUNS_ON: ubuntu-latest
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# - name: Ubuntu (22.04, clang 15.0.7 + gcc 11.4.0, open-mpi 4.1.2)
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# DOCKER_ROOT_IMAGE: ubuntu:22.04
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# DOCKER_REPOSITORY: geosx/ubuntu22.04-clang15
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# TPL_DOCKERFILE: docker/tpl-ubuntu-clang.Dockerfile
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# DOCKER_COMPILER_BUILD_ARG: "--build-arg CLANG_MAJOR_VERSION=15 --build-arg GCC_MAJOR_VERSION=11"
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# RUNS_ON: ubuntu-latest
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# - name: Ubuntu (20.04, clang 10.0.0 + gcc 9.4.0, open-mpi 4.0.3, cuda-11.8.89)
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# DOCKER_REPOSITORY: geosx/ubuntu20.04-clang10.0.0-cuda11.8.89
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# TPL_DOCKERFILE: docker/tpl-ubuntu-clang-cuda.Dockerfile
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# RUNS_ON: ubuntu-latest
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- name: Rockylinux (8, gcc 13.3, cuda 12.9.1)
5757
DOCKER_REPOSITORY: geosx/rockylinux8-gcc13-cuda12.9.1
5858
TPL_DOCKERFILE: docker/tpl-rockylinux-gcc-cuda-12.Dockerfile
5959
RUNS_ON: Runner_4core_16GB
60-
- name: Rockylinux (8, clang 17.0.6, cuda 12.9.1)
61-
DOCKER_REPOSITORY: geosx/rockylinux8-clang17-cuda12.9.1
62-
TPL_DOCKERFILE: docker/tpl-rockylinux-clang-cuda-12.Dockerfile
60+
- name: Rockylinux (8, gcc 13.3, cuda 12.9.1, pygeosx)
61+
DOCKER_REPOSITORY: geosx/rockylinux8-gcc13-cuda12.9.1
62+
TPL_DOCKERFILE: docker/tpl-rockylinux-gcc-cuda-12-pygeosx.Dockerfile
6363
RUNS_ON: Runner_4core_16GB
64-
- name: Pangea 3 (AlmaLinux 8.8, gcc 9.4.0, open-mpi 4.1.2, cuda 11.5.0, openblas 0.3.10)
65-
DOCKER_REPOSITORY: geosx/pangea3-almalinux8-gcc9.4-openmpi4.1.2-cuda11.5.0-openblas0.3.18
66-
TPL_DOCKERFILE: docker/TotalEnergies/Pangea3.Dockerfile
67-
DOCKER_ROOT_IMAGE: 7g8efcehpff/pangea-almalinux8-gcc9.4-openmpi4.1.2-cuda11.5.0-openblas0.3.18:4
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HOST_ARCH: ppc64le
69-
RUNS_ON: streak2
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- name: Sherlock CPU (centos 7.9.2009, gcc 10.1.0, open-mpi 4.1.2, openblas 0.3.10, zlib 1.2.11)
71-
DOCKER_REPOSITORY: geosx/sherlock-gcc10.1.0-openmpi4.1.2-openblas0.3.10-zlib1.2.11
72-
TPL_DOCKERFILE: docker/Stanford/Dockerfile
73-
DOCKER_ROOT_IMAGE: matteofrigo5/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11-cmake3.31.4-no-geosx:0.0.1
74-
SPEC: "%gcc@10.1.0~pygeosx~openmp"
75-
INSTALL_DIR_ROOT: /oak/stanford/groups/tchelepi/geos-sherlock/CPU
76-
RUNS_ON: ubuntu-latest
77-
- name: Sherlock GPU (centos 7.9.2009, gcc 10.1.0, open-mpi 4.1.2, cuda 12.4.0, openblas 0.3.10, zlib 1.2.11)
78-
DOCKER_REPOSITORY: geosx/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11
79-
TPL_DOCKERFILE: docker/Stanford/Dockerfile
80-
DOCKER_ROOT_IMAGE: matteofrigo5/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11-cmake3.31.4-no-geosx:0.0.1
81-
SPEC: "%gcc@10.1.0~pygeosx~openmp cuda_arch=70 ^cuda@12.4.0+allow-unsupported-compilers"
82-
INSTALL_DIR_ROOT: /oak/stanford/groups/tchelepi/geos-sherlock/GPU
83-
RUNS_ON: ubuntu-latest
64+
# - name: Rockylinux (8, clang 17.0.6, cuda 12.9.1)
65+
# DOCKER_REPOSITORY: geosx/rockylinux8-clang17-cuda12.9.1
66+
# TPL_DOCKERFILE: docker/tpl-rockylinux-clang-cuda-12.Dockerfile
67+
# RUNS_ON: Runner_4core_16GB
68+
# - name: Pangea 3 (AlmaLinux 8.8, gcc 9.4.0, open-mpi 4.1.2, cuda 11.5.0, openblas 0.3.10)
69+
# DOCKER_REPOSITORY: geosx/pangea3-almalinux8-gcc9.4-openmpi4.1.2-cuda11.5.0-openblas0.3.18
70+
# TPL_DOCKERFILE: docker/TotalEnergies/Pangea3.Dockerfile
71+
# DOCKER_ROOT_IMAGE: 7g8efcehpff/pangea-almalinux8-gcc9.4-openmpi4.1.2-cuda11.5.0-openblas0.3.18:4
72+
# HOST_ARCH: ppc64le
73+
# RUNS_ON: streak2
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# - name: Sherlock CPU (centos 7.9.2009, gcc 10.1.0, open-mpi 4.1.2, openblas 0.3.10, zlib 1.2.11)
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# DOCKER_REPOSITORY: geosx/sherlock-gcc10.1.0-openmpi4.1.2-openblas0.3.10-zlib1.2.11
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# TPL_DOCKERFILE: docker/Stanford/Dockerfile
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# DOCKER_ROOT_IMAGE: matteofrigo5/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11-cmake3.31.4-no-geosx:0.0.1
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# SPEC: "%gcc@10.1.0~pygeosx~openmp"
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# INSTALL_DIR_ROOT: /oak/stanford/groups/tchelepi/geos-sherlock/CPU
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# RUNS_ON: ubuntu-latest
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# - name: Sherlock GPU (centos 7.9.2009, gcc 10.1.0, open-mpi 4.1.2, cuda 12.4.0, openblas 0.3.10, zlib 1.2.11)
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# DOCKER_REPOSITORY: geosx/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11
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# TPL_DOCKERFILE: docker/Stanford/Dockerfile
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# DOCKER_ROOT_IMAGE: matteofrigo5/sherlock-gcc10.1.0-openmpi4.1.2-cuda12.4.0-openblas0.3.10-zlib1.2.11-cmake3.31.4-no-geosx:0.0.1
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# SPEC: "%gcc@10.1.0~pygeosx~openmp cuda_arch=70 ^cuda@12.4.0+allow-unsupported-compilers"
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# INSTALL_DIR_ROOT: /oak/stanford/groups/tchelepi/geos-sherlock/GPU
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# RUNS_ON: ubuntu-latest
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steps:
8690
- name: Checkout

‎docker/rocky-spack-pygeosx.yaml‎

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spack:
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config:
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install_tree:
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root: $spack/..
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projections:
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all: '{compiler.name}-{compiler.version}/{name}-{version}-{hash}'
7+
misc_cache: $spack/../misc_cache
8+
test_stage: $spack/../test_stage
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build_stage::
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- $spack/../build_stage
11+
12+
# Regular TPLs do not need views
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view: false
14+
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# Include shared variants and versions
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include:
17+
- ../defaults.yaml
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- ../versions.yaml
19+
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compilers::
21+
- compiler:
22+
extra_rpaths: []
23+
flags:
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cflags: -pthread
25+
cxxflags: -pthread
26+
modules: []
27+
operating_system: rocky8
28+
paths:
29+
cc: /usr/bin/clang
30+
cxx: /usr/bin/clang++
31+
f77: /usr/bin/gfortran
32+
fc: /usr/bin/gfortran
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spec: clang@17.0.6
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target: x86_64
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- compiler:
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extra_rpaths: []
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flags:
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cflags: -pthread
39+
cxxflags: -pthread
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modules: []
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operating_system: rocky8
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paths:
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cc: /opt/rh/gcc-toolset-13/root/usr/bin/gcc
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cxx: /opt/rh/gcc-toolset-13/root/usr/bin/g++
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f77: /opt/rh/gcc-toolset-13/root/usr/bin/gfortran
46+
fc: /opt/rh/gcc-toolset-13/root/usr/bin/gfortran
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spec: gcc@13.3.1
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target: x86_64
49+
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packages:
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all:
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target: [x86_64]
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compiler: [gcc, clang]
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providers:
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blas: [netlib-lapack]
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lapack: [netlib-lapack]
57+
mpi: [openmpi]
58+
59+
autoconf:
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version: [2.71]
61+
buildable: false
62+
externals:
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- spec: autoconf@2.71
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prefix: /usr
65+
automake:
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version: [1.16.5]
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buildable: false
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externals:
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- spec: automake@1.16.5
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prefix: /usr
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cmake:
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version: [3.28.6]
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buildable: false
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externals:
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- spec: cmake@3.28.6
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prefix: /usr/local
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cuda:
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buildable: False
79+
externals:
80+
- spec: cuda@12.9.1%gcc@13.3.1 +allow-unsupported-compilers
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prefix: /usr/local/cuda
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- spec: cuda@12.9.1%clang@17.0.6 +allow-unsupported-compilers
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prefix: /usr/local/cuda
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m4:
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buildable: false
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externals:
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- spec: m4@1.4.18
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prefix: /usr
89+
90+
# Spack may grab for mpi & we don't want to use them
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mpi:
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buildable: false
93+
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netlib-lapack:
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buildable: false
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externals:
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- spec: netlib-lapack@3.8.0
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prefix: /usr
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netlib-blas:
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buildable: false
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externals:
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- spec: netlib-blas@3.8.0
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prefix: /usr
104+
openmpi:
105+
externals:
106+
- spec: openmpi@4.1.1
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prefix: /usr/lib64/openmpi
108+
perl:
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buildable: false
110+
externals:
111+
- spec: perl@5.26.3
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prefix: /usr
113+
pkg-config:
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buildable: false
115+
externals:
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- spec: pkg-config@1.4.2
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prefix: /usr
118+
# python:
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# buildable: false
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# externals:
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# - spec: python@3.6.8
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# prefix: /usr
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tar:
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buildable: false
125+
externals:
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- spec: tar@1.34
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prefix: /usr
128+
unzip:
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buildable: false
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externals:
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- spec: unzip@6.0
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prefix: /usr
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xz:
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buildable: false
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externals:
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- spec: xz@5.2.5
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prefix: /usr
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# Pygeosx dependencies
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openssl:
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buildable: false
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externals:
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- spec: openssl@1.1.1
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prefix: /usr
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tk:
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buildable: false
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externals:
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- spec: tk@8.6.8
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prefix: /usr
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tcl:
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buildable: false
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externals:
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- spec: tcl@8.6.8
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prefix: /usr

‎docker/rocky-spack.yaml‎

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@@ -118,7 +118,7 @@ spack:
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python:
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buildable: false
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externals:
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- spec: python@3.6.8
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- spec: python@3.9.20
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prefix: /usr
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tar:
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buildable: false

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