ENH: Bump ITK and replace http with https using script

tbirdso · dzenanz · commit 053938256c2f · 2022-06-01T02:16:10.000-04:00
diff --git a/.clang-format b/.clang-format
@@ -4,7 +4,7 @@
 ## See: https://clang.llvm.org/docs/ClangFormatStyleOptions.html for details of each option
 ##
 ## The clang-format binaries can be downloaded as part of the clang binary distributions
-## from http://releases.llvm.org/download.html
+## from https://releases.llvm.org/download.html
 ##
 ## Use the script Utilities/Maintenance/clang-format.bash to faciliate
 ## maintaining a consistent code style.
diff --git a/.github/workflows/build-test-package.yml b/.github/workflows/build-test-package.yml
@@ -3,7 +3,7 @@ name: Build, test, package
 on: [push,pull_request]
 
 env:
-  itk-git-tag: "801370c025c7d296783481779a41c6d559c992c5"
+  itk-git-tag: "d6acfd26bfcdec606d605beb1301bddfb17c05a6"
   itk-wheel-tag: "v5.3rc04"
 
 jobs:
diff --git a/LICENSE b/LICENSE
@@ -1,7 +1,7 @@
 
                                  Apache License
                            Version 2.0, January 2004
-                        http://www.apache.org/licenses/
+                        https://www.apache.org/licenses/
 
    TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION
 
@@ -193,7 +193,7 @@
    you may not use this file except in compliance with the License.
    You may obtain a copy of the License at
 
-       http://www.apache.org/licenses/LICENSE-2.0
+       https://www.apache.org/licenses/LICENSE-2.0
 
    Unless required by applicable law or agreed to in writing, software
    distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/doc/InsightArticle.cls b/doc/InsightArticle.cls
@@ -76,11 +76,11 @@
 
 % Define command to make reference to on-line Doxygen documentation
 \newcommand{\doxygen}[1]{
-\href{http://www.itk.org/Doxygen/html/classitk_1_1#1.html}{\code{itk::#1}}}
+\href{https://www.itk.org/Doxygen/html/classitk_1_1#1.html}{\code{itk::#1}}}
 
 % Define command to make reference to on-line Doxygen documentation
 \newcommand{\subdoxygen}[2]{
-\href{http://www.itk.org/Doxygen/html/classitk_1_1#1_1_1#2.html}{\code{itk::#1::#2}}}
+\href{https://www.itk.org/Doxygen/html/classitk_1_1#1_1_1#2.html}{\code{itk::#1::#2}}}
 
 % Define command for the standard comment introducing classes with similar functionalities
 \newcommand{\relatedClasses}{
diff --git a/doc/InsightJournal.sty b/doc/InsightJournal.sty
@@ -1109,11 +1109,11 @@
 %  Commands for adding the link reference to the URL in the Insight Journal
 %
 \newcommand{\urlhandle}[1]{
-\url{http://hdl.handle.net/10380/#1}}
+\url{https://hdl.handle.net/10380/#1}}
 
 \newcommand{\IJhandle}[1]{
-Latest version available at the \href{http://www.insight-journal.org}{Insight Journal} [\urlhandle{#1}]\\
-Distributed under \href{http://creativecommons.org/licenses/by/3.0/us/}{Creative Commons Attribution License}}
+Latest version available at the \href{https://www.insight-journal.org}{Insight Journal} [\urlhandle{#1}]\\
+Distributed under \href{https://creativecommons.org/licenses/by/3.0/us/}{Creative Commons Attribution License}}
 
 \newcommand{\IJhandlefooter}[1]{
 \fancyfoot[CO,CE]{
diff --git a/doc/ij_higher_order_accurate_gradient.bib b/doc/ij_higher_order_accurate_gradient.bib
@@ -5,7 +5,7 @@ @article{Khan2003
 keywords = {backward di erence approximations,central di erence approximations,finite di erence approximations,forward di erence approximations,higher-degree derivatives,numerical di erentiation,taylor series},
 pages = {115 -- 124},
 title = {{Taylor series based finite difference approximations of higher-degree derivatives}},
-url = {http://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.149.7922\&amp;rep=rep1\&amp;type=pdf},
+url = {https://citeseerx.ist.psu.edu/viewdoc/download?doi=10.1.1.149.7922\&amp;rep=rep1\&amp;type=pdf},
 volume = {154},
 year = {2003}
 }
@@ -16,11 +16,11 @@ @article{Khan1999
 keywords = {digital \"{y}lter,finite di erence formula,numerical di erentiation,taylor series},
 pages = {179--193},
 title = {{Closed-form expressions for the finite difference approximations of first and higher derivatives based on Taylor series}},
-url = {http://linkinghub.elsevier.com/retrieve/pii/S0377042799000886},
+url = {https://linkinghub.elsevier.com/retrieve/pii/S0377042799000886},
 volume = {107},
 year = {1999}
 }
 @misc{itk,
 title = {{The Insight Segmentation and Registration Toolkit}},
-url = {http://www.itk.org/}
+url = {https://www.itk.org/}
 }
diff --git a/doc/ij_higher_order_accurate_gradient.pdf b/doc/ij_higher_order_accurate_gradient.pdf
diff --git a/doc/ij_higher_order_accurate_gradient.tex b/doc/ij_higher_order_accurate_gradient.tex
@@ -4,7 +4,7 @@
 % of the standard documentation for Insight.  It may be found online
 % at:
 %
-%     http://www.itk.org/
+%     https://www.itk.org/
 
 \documentclass{InsightArticle}
 
diff --git a/include/itkHigherOrderAccurateDerivativeImageFilter.h b/include/itkHigherOrderAccurateDerivativeImageFilter.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkHigherOrderAccurateDerivativeImageFilter.hxx b/include/itkHigherOrderAccurateDerivativeImageFilter.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkHigherOrderAccurateDerivativeOperator.h b/include/itkHigherOrderAccurateDerivativeOperator.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkHigherOrderAccurateDerivativeOperator.hxx b/include/itkHigherOrderAccurateDerivativeOperator.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkHigherOrderAccurateGradientImageFilter.h b/include/itkHigherOrderAccurateGradientImageFilter.h
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/include/itkHigherOrderAccurateGradientImageFilter.hxx b/include/itkHigherOrderAccurateGradientImageFilter.hxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/itk-module.cmake b/itk-module.cmake
@@ -3,8 +3,8 @@ set(DOCUMENTATION "This module contains a filter to compute higher order
 accurate numerical derivatives and gradients from an input scalar image.
 field from a displacement field image.
 Higher Order Accurate Derivative and Gradient Calculation in ITK
-http://www.insight-journal.org/browse/publication/775
-http://hdl.handle.net/10380/3231
+https://www.insight-journal.org/browse/publication/775
+https://hdl.handle.net/10380/3231
 ")
 
 itk_module(HigherOrderAccurateGradient
diff --git a/setup.py b/setup.py
@@ -24,7 +24,7 @@
                      'accurate derivative and gradient image filters.\n'
                      'Please refer to:\n'
                      'M. McCormick, "Higher Order Accurate Derivative and Gradient Calculation in ITK.", '
-                     'Insight Journal, July-December 2010, http://hdl.handle.net/10380/3231',
+                     'Insight Journal, July-December 2010, https://hdl.handle.net/10380/3231',
     classifiers=[
         "License :: OSI Approved :: Apache Software License",
         "Programming Language :: Python",
diff --git a/test/itkHigherOrderAccurateDerivativeImageFilterTest.cxx b/test/itkHigherOrderAccurateDerivativeImageFilterTest.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,
diff --git a/test/itkHigherOrderAccurateGradientImageFilterTest.cxx b/test/itkHigherOrderAccurateGradientImageFilterTest.cxx
@@ -6,7 +6,7 @@
  *  you may not use this file except in compliance with the License.
  *  You may obtain a copy of the License at
  *
- *         http://www.apache.org/licenses/LICENSE-2.0.txt
+ *         https://www.apache.org/licenses/LICENSE-2.0.txt
  *
  *  Unless required by applicable law or agreed to in writing, software
  *  distributed under the License is distributed on an "AS IS" BASIS,

Original file line number	Diff line number	Diff line change
`@@ -4,7 +4,7 @@`
`4`	`4`	`% of the standard documentation for Insight. It may be found online`
`5`	`5`	`% at:`
`6`	`6`	`%`
`7`		`-% http://www.itk.org/`
	`7`	`+% https://www.itk.org/`
`8`	`8`
`9`	`9`	`\documentclass{InsightArticle}`
`10`	`10`
Original file line number	Diff line number	Diff line change
`@@ -6,7 +6,7 @@`
`6`	`6`	`* you may not use this file except in compliance with the License.`
`7`	`7`	`* You may obtain a copy of the License at`
`8`	`8`	`*`
`9`		`- * http://www.apache.org/licenses/LICENSE-2.0.txt`
	`9`	`+ * https://www.apache.org/licenses/LICENSE-2.0.txt`
`10`	`10`	`*`
`11`	`11`	`* Unless required by applicable law or agreed to in writing, software`
`12`	`12`	`* distributed under the License is distributed on an "AS IS" BASIS,`