STYLE: Rework the folder structure and rename files.

Rework the folder structure of the LaTeX SW Guide files: create folders to
host the *.tex files for each part:
- Introduction
- Architecture
- DevelopmentGuidelines
- DesignAndFunctionality
- Appendices

Rename the files to remove the part acronym and chapter number.

Move "Iterators" and "Image Adaptors" chapters from "Development
Guidelines" part to "Architecture".

As per KWStyle, remove new lines in excess at the end of files.

Change-Id: Ifa5346a657d607bb349ed0be23bc6e78b7df4199

Author: Jon Haitz Legarreta Gorroño

SoftwareGuide/Latex/AP02-CodingStyleGuide.tex renamed to SoftwareGuide/Latex/Appendices/CodingStyleGuide.tex

@@ -349,7 +349,7 @@ \section{Citations}
 not use URL shortening services.
 
 When documenting a class header, if citations are required, use the Doxygen
-\code{\par References} command to list the references in a separate and clearly
+\code{\\par References} command to list the references in a separate and clearly
 visible paragraph.
 
 For instance,

SoftwareGuide/Latex/AP01-Licenses.tex renamed to SoftwareGuide/Latex/Appendices/Licenses.tex

@@ -87,4 +87,3 @@ \section{Adaptors and Writers}
 this circumstances is incorrect. You should avoid instantiating the
 \code{ImageFileWriter} or the \code{ImageSeriesWriter} over an image adaptor
 type.
-

SoftwareGuide/Latex/A02-DataRepresentation.tex renamed to SoftwareGuide/Latex/Architecture/DataRepresentation.tex

@@ -78,21 +78,21 @@ set( Book1_Tex_SRCS
   02-Cover-Book1.tex
   03-Abstract-Book1.tex
 ## Introduction
-  I01-Introduction.tex
-  I02-Installation.tex
+  ./Introduction/Introduction.tex
+  ./Introduction/Installation.tex
 ## Architecture
-  A01-SystemOverview.tex
-  A02-DataRepresentation.tex
-  A03-SpatialObjects.tex
+  ./Architecture/SystemOverview.tex
+  ./Architecture/DataRepresentation.tex
+  ./Architecture/SpatialObjects.tex
+  ./Architecture/Iterators.tex
+  ./Architecture/ImageAdaptors.tex
 ## Development Guidelines
-  DG01-Iterators.tex
-  DG02-ImageAdaptors.tex
-  DG03-WriteAFilter.tex
-  DG04-CreateAModule.tex
-  DG05-SoftwareProcess.tex
+  ./DevelopmentGuidelines/WriteAFilter.tex
+  ./DevelopmentGuidelines/CreateAModule.tex
+  ./DevelopmentGuidelines/SoftwareProcess.tex
 ## Appendix
-  AP01-Licenses.tex
-  AP02-CodingStyleGuide.tex
+  ./Appendices/Licenses.tex
+  ./Appendices/CodingStyleGuide.tex
   )
 
 set( Book2_Tex_SRCS
@@ -102,24 +102,24 @@ set( Book2_Tex_SRCS
   02-Cover-Book2.tex
   03-Abstract-Book2.tex
 ## Design and Functionality
-  DF01-IO.tex
-  DF02-Filtering.tex
-  #A03a-AnisotropicDiffusionFiltering.tex
-  DF03-Registration.tex
-  DF04-Segmentation.tex
-  DF05-Statistics.tex
+  ./DesignAndFunctionality/IO.tex
+  ./DesignAndFunctionality/Filtering.tex
+  #./DesignAndFunctionality/AnisotropicDiffusionFiltering.tex
+  ./DesignAndFunctionality/Registration.tex
+  ./DesignAndFunctionality/Segmentation.tex
+  ./DesignAndFunctionality/Statistics.tex
   )
 
 set( Tex_SRCS
 ## -- HACK TODO
 #set   NOT_YET_SRCS # This needs to be added one at a time as they are cleaned up
-  ImageMetrics.tex
-  ImageInterpolators.tex
-  Transforms.tex
+  ./DesignAndFunctionality/ImageMetrics.tex
+  ./DesignAndFunctionality/ImageInterpolators.tex
+  ./DesignAndFunctionality/Transforms.tex
   Visualization.tex
-  WatershedSegmentation.tex
+  ./DesignAndFunctionality/WatershedSegmentation.tex
 
-  DG06-MarketingMaterial.tex
+  MarketingMaterial.tex
   )
 
 set( SoftwareGuide_Book1_Tex_SRCS "" )

SoftwareGuide/Latex/DG02-ImageAdaptors.tex renamed to SoftwareGuide/Latex/Architecture/ImageAdaptors.tex

@@ -21,5 +21,3 @@ \subsubsection{Application of the Confidence Connected filter on the Brain Web D
 \itkcaption[Axial, sagittal, and coronal slice of Confidence Connected segmentation.]{Axial, sagittal and coronal slice segmented using Confidence Connected region growing.}
 \label{fig:SlicesBrainWeb}
 \end{figure}
-
-