Remove the timelimit for CellRanger count

arteymix · arteymix · commit 592ac4df5e01 · 2025-11-01T11:40:20.000-07:00
diff --git a/rnaseq_pipeline/tasks.py b/rnaseq_pipeline/tasks.py
@@ -502,8 +502,7 @@ def run(self):
             output_dir=self.output().path,
             chemistry=self.chemistry,
             # TODO: add an avx feature on slurm
-            scheduler_extra_args=['--constraint', 'thrd64', '--gres=scratch=300G'],
-            walltime=datetime.timedelta(days=1)
+            scheduler_extra_args=['--constraint', 'thrd64', '--gres=scratch=300G']
         )
 
     def output(self):

Original file line number	Diff line number	Diff line change
`@@ -502,8 +502,7 @@ def run(self):`
`502`	`502`	`output_dir=self.output().path,`
`503`	`503`	`chemistry=self.chemistry,`
`504`	`504`	`# TODO: add an avx feature on slurm`
`505`		`- scheduler_extra_args=['--constraint', 'thrd64', '--gres=scratch=300G'],`
`506`		`- walltime=datetime.timedelta(days=1)`
	`505`	`+ scheduler_extra_args=['--constraint', 'thrd64', '--gres=scratch=300G']`
`507`	`506`	`)`
`508`	`507`
`509`	`508`	`def output(self):`