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fixup! WIP
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rnaseq_pipeline/tasks.py

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@@ -478,6 +478,7 @@ class AlignSingleCellSample(DynamicWrapperTask):
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def run(self):
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fastqs_dir, transcriptome_dir = self.input()
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yield CellRangerCount(
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id=self.sample_id,
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transcriptome_dir=transcriptome_dir,
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fastqs_dir=fastqs_dir,
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output_dir=self.output().path,

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