EMtree is (partially) incompatible with the latest release of PLNmodels

[fplazaonate]

Hi Raphaelle,

I tried to build EMtree with vignettes and it ends with the following error:

── R CMD build ──────────────────────────────────────────────────────────────────────────────────────────────────────────
✔  checking for file ‘/tmp/Rtmp8bt1Hu/remotes1a630a6b65ee73/Rmomal-EMtree-0358eb8/DESCRIPTION’ (373ms)
─  preparing ‘EMtree’:
✔  checking DESCRIPTION meta-information
─  installing the package to build vignettes
E  creating vignettes (18.1s)
   --- re-building ‘Fatala_Net.Rmd’ using rmarkdown
   
   Quitting from lines 83-85 [unnamed-chunk-5] (Fatala_Net.Rmd)
   Error: processing vignette 'Fatala_Net.Rmd' failed with diagnostics:
   We now use the function PLN_param() to generate the list of parameters that controls the fit:
       replace 'list(my_arg = xx)' by PLN_param(my_arg = xx) and see the documentation of PLN_param().
   --- failed re-building ‘Fatala_Net.Rmd’
   
   SUMMARY: processing the following file failed:
     ‘Fatala_Net.Rmd’
   
   Error: Vignette re-building failed.
   Execution halted

Can you please update your code to make it fully compatible with PLNmodels 1.2.0?

Best,
Florian

[Rmomal]

Thanks a lot @fplazaonate for catching this! I updated the code, the vignette runs on my side with PLNmodels 1.2.0. Let me know if the latest release of EMtree solves the issue for you.

[fplazaonate]

Thanks @Rmomal for the quick fix.
Creating vignettes is very long but does not crashes instantaneously like before.
I will keep you informed.