Removing unused headers

andrewherren · andrewherren · commit c62185c0c332 · 2025-07-23T15:47:57.000-03:00
diff --git a/include/stochtree/category_tracker.h b/include/stochtree/category_tracker.h
@@ -29,12 +29,8 @@
 #include <stochtree/log.h>
 #include <stochtree/meta.h>
 
-#include <cmath>
 #include <map>
 #include <numeric>
-#include <random>
-#include <set>
-#include <string>
 #include <vector>
 
 namespace StochTree {
diff --git a/include/stochtree/common.h b/include/stochtree/common.h
@@ -8,22 +8,18 @@
 #include <stochtree/log.h>
 
 #include <algorithm>
-#include <chrono>
 #include <cmath>
 #include <cstdint>
 #include <cstdio>
 #include <cstdlib>
 #include <cstring>
-#include <functional>
 #include <iomanip>
 #include <iterator>
 #include <limits>
-#include <map>
 #include <memory>
 #include <sstream>
 #include <string>
 #include <type_traits>
-#include <unordered_map>
 #include <utility>
 #include <vector>
 
diff --git a/include/stochtree/container.h b/include/stochtree/container.h
@@ -11,12 +11,7 @@
 #include <nlohmann/json.hpp>
 #include <stochtree/tree.h>
 
-#include <algorithm>
-#include <deque>
 #include <fstream>
-#include <optional>
-#include <random>
-#include <unordered_map>
 
 namespace StochTree {
 
diff --git a/include/stochtree/cutpoint_candidates.h b/include/stochtree/cutpoint_candidates.h
@@ -42,8 +42,6 @@
 #include <stochtree/meta.h>
 #include <stochtree/partition_tracker.h>
 
-#include <tuple>
-
 namespace StochTree {
 
 /*! \brief Computing and tracking cutpoints available for a given feature at a given node
diff --git a/include/stochtree/data.h b/include/stochtree/data.h
@@ -9,7 +9,6 @@
 #include <stochtree/io.h>
 #include <stochtree/log.h>
 #include <stochtree/meta.h>
-#include <memory>
 
 namespace StochTree {
 
diff --git a/include/stochtree/ensemble.h b/include/stochtree/ensemble.h
@@ -14,12 +14,6 @@
 #include <stochtree/tree.h>
 #include <nlohmann/json.hpp>
 
-#include <algorithm>
-#include <deque>
-#include <optional>
-#include <random>
-#include <unordered_map>
-
 using json = nlohmann::json;
 
 namespace StochTree {
diff --git a/include/stochtree/io.h b/include/stochtree/io.h
@@ -28,12 +28,10 @@
 #include <cstdlib>
 #include <cstring>
 #include <functional>
-#include <iostream>
 #include <memory>
 #include <sstream>
 #include <string>
 #include <thread>
-#include <unordered_map>
 #include <utility>
 #include <vector>
 
diff --git a/include/stochtree/leaf_model.h b/include/stochtree/leaf_model.h
@@ -19,7 +19,6 @@
 #include <stochtree/tree.h>
 
 #include <random>
-#include <tuple>
 #include <variant>
 
 namespace StochTree {
diff --git a/include/stochtree/log.h b/include/stochtree/log.h
@@ -15,8 +15,6 @@
 #include <cstdio>
 #include <cstdlib>
 #include <cstring>
-#include <exception>
-#include <iostream>
 #include <stdexcept>
 #include <string>
 
diff --git a/include/stochtree/meta.h b/include/stochtree/meta.h
@@ -14,7 +14,6 @@
 #include <cstdint>
 #include <functional>
 #include <limits>
-#include <memory>
 #include <unordered_map>
 #include <utility>
 #include <vector>
diff --git a/include/stochtree/openmp_utils.h b/include/stochtree/openmp_utils.h
@@ -3,7 +3,6 @@
 
 #include <stochtree/common.h>
 #include <algorithm>
-#include <vector>
 
 namespace StochTree {
 
diff --git a/include/stochtree/partition_tracker.h b/include/stochtree/partition_tracker.h
@@ -31,11 +31,7 @@
 #include <stochtree/openmp_utils.h>
 #include <stochtree/tree.h>
 
-#include <cmath>
 #include <numeric>
-#include <random>
-#include <set>
-#include <string>
 #include <vector>
 
 namespace StochTree {
diff --git a/include/stochtree/random.h b/include/stochtree/random.h
@@ -5,7 +5,6 @@
 #ifndef STOCHTREE_RANDOM_H_
 #define STOCHTREE_RANDOM_H_
 
-#include <cstdint>
 #include <random>
 #include <set>
 #include <vector>
diff --git a/include/stochtree/random_effects.h b/include/stochtree/random_effects.h
@@ -17,14 +17,11 @@
 #include <nlohmann/json.hpp>
 #include <Eigen/Dense>
 
-#include <cmath>
 #include <fstream>
 #include <map>
 #include <memory>
 #include <random>
-#include <set>
 #include <string>
-#include <type_traits>
 #include <vector>
 
 namespace StochTree {
diff --git a/include/stochtree/tree.h b/include/stochtree/tree.h
@@ -13,9 +13,6 @@
 #include <Eigen/Dense>
 
 #include <cstdint>
-#include <map>
-#include <optional>
-#include <set>
 #include <stack>
 #include <string>
 
diff --git a/include/stochtree/tree_sampler.h b/include/stochtree/tree_sampler.h
@@ -13,14 +13,8 @@
 #include <stochtree/prior.h>
 
 #include <cmath>
-#include <map>
-#include <memory>
 #include <numeric>
 #include <random>
-#include <set>
-#include <string>
-#include <type_traits>
-#include <variant>
 #include <vector>
 
 namespace StochTree {
diff --git a/include/stochtree/variance_model.h b/include/stochtree/variance_model.h
@@ -12,11 +12,7 @@
 #include <stochtree/ig_sampler.h>
 #include <stochtree/meta.h>
 
-#include <cmath>
 #include <random>
-#include <set>
-#include <string>
-#include <vector>
 
 namespace StochTree {
 
diff --git a/src/R_data.cpp b/src/R_data.cpp
@@ -4,7 +4,6 @@
 #include <stochtree/partition_tracker.h>
 #include <stochtree/tree_sampler.h>
 #include <memory>
-#include <vector>
 
 [[cpp11::register]]
 cpp11::external_pointer<StochTree::ForestDataset> create_forest_dataset_cpp() {
diff --git a/src/R_random_effects.cpp b/src/R_random_effects.cpp
@@ -7,9 +7,7 @@
 #include <stochtree/random_effects.h>
 #include <stochtree/tree_sampler.h>
 #include <stochtree/variance_model.h>
-#include <functional>
 #include <memory>
-#include <vector>
 
 [[cpp11::register]]
 cpp11::external_pointer<StochTree::RandomEffectsContainer> rfx_container_cpp(int num_components, int num_groups) {
diff --git a/src/cutpoint_candidates.cpp b/src/cutpoint_candidates.cpp
@@ -2,7 +2,6 @@
 #include <stochtree/meta.h>
 
 #include <numeric>
-#include <tuple>
 
 namespace StochTree {
 
diff --git a/src/data.cpp b/src/data.cpp
@@ -1,7 +1,6 @@
 /*! Copyright (c) 2024 by stochtree authors */
 #include <Eigen/Dense>
 #include <stochtree/data.h>
-#include <iostream>
 
 namespace StochTree {
 
diff --git a/src/forest.cpp b/src/forest.cpp
@@ -7,9 +7,7 @@
 #include <stochtree/partition_tracker.h>
 #include <stochtree/tree_sampler.h>
 #include <stochtree/variance_model.h>
-#include <functional>
 #include <memory>
-#include <vector>
 
 [[cpp11::register]]
 cpp11::external_pointer<StochTree::TreeEnsemble> active_forest_cpp(int num_trees, int output_dimension = 1, bool is_leaf_constant = true, bool is_exponentiated = false) {
diff --git a/src/io.cpp b/src/io.cpp
@@ -7,9 +7,7 @@
 #include <stochtree/io.h>
 #include <stochtree/log.h>
 
-#include <algorithm>
 #include <sstream>
-#include <unordered_map>
 
 namespace StochTree {
 
diff --git a/src/kernel.cpp b/src/kernel.cpp
@@ -3,8 +3,6 @@
 #include <stochtree/log.h>
 #include <Eigen/Dense>
 #include <Eigen/Dense>
-#include <memory>
-#include <vector>
 
 typedef Eigen::Map<Eigen::Matrix<double, Eigen::Dynamic, Eigen::Dynamic, Eigen::ColMajor>> DoubleMatrixType;
 typedef Eigen::Map<Eigen::Matrix<int, Eigen::Dynamic, Eigen::Dynamic, Eigen::ColMajor>> IntMatrixType;
diff --git a/src/partition_tracker.cpp b/src/partition_tracker.cpp
@@ -6,12 +6,6 @@
 #include <stochtree/io.h>
 #include <stochtree/partition_tracker.h>
 
-#include <chrono>
-#include <cstdio>
-#include <limits>
-#include <sstream>
-#include <unordered_map>
-
 namespace StochTree {
 
 ForestTracker::ForestTracker(Eigen::MatrixXd& covariates, std::vector<FeatureType>& feature_types, int num_trees, int num_observations) {
diff --git a/src/py_stochtree.cpp b/src/py_stochtree.cpp
@@ -12,7 +12,6 @@
 #include <stochtree/variance_model.h>
 #include <functional>
 #include <memory>
-#include <string>
 
 #define STRINGIFY(x) #x
 #define MACRO_STRINGIFY(x) STRINGIFY(x)
diff --git a/src/sampler.cpp b/src/sampler.cpp
@@ -7,10 +7,7 @@
 #include <stochtree/partition_tracker.h>
 #include <stochtree/tree_sampler.h>
 #include <stochtree/variance_model.h>
-#include <functional>
 #include <memory>
-#include <variant>
-#include <vector>
 
 [[cpp11::register]]
 void sample_gfr_one_iteration_cpp(cpp11::external_pointer<StochTree::ForestDataset> data, 
diff --git a/src/serialization.cpp b/src/serialization.cpp
@@ -8,9 +8,6 @@
 #include <stochtree/tree_sampler.h>
 #include <stochtree/variance_model.h>
 #include <nlohmann/json.hpp>
-#include <functional>
-#include <memory>
-#include <vector>
 
 [[cpp11::register]]
 cpp11::external_pointer<nlohmann::json> init_json_cpp() {
diff --git a/src/tree.cpp b/src/tree.cpp
@@ -8,9 +8,6 @@
 #include <stochtree/tree.h>
 
 #include <algorithm>
-#include <cmath>
-#include <type_traits>
-#include <sstream>
 
 namespace StochTree {
 
