Merge pull request #21 from Tractables/migration

Migration to Tractables

Author: khosravipasha

.github/workflows/ci.yml

@@ -1,32 +1,41 @@
-name: Unit Tests 
-
-# Controls when the action will run. Triggers the workflow on push or pull request
-# events but only for the master branch
-on: 
-  pull_request:
+name: Unit Tests
+on:
   push:
+    branches: [master]
+    tags: ["*"]
+  pull_request:
   workflow_dispatch:
-
+permissions:
+  actions: write
+  contents: read
 env:
+  DATADEPS_ALWAYS_ACCEPT: 1
   JIVE_PROCS: 1
-
 jobs:
-  build:
-    runs-on: ubuntu-20.04
-
+  test:
+    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        version:
+          - '1.6'
+          - '1'
+          - 'nightly'
+        os:
+          - ubuntu-latest
+        arch:
+          - x64
     steps:
-      
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@latest
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
+        with:
+          version: ${{ matrix.version }}
+          arch: ${{ matrix.arch }}
+      - uses: julia-actions/cache@v1
+      - uses: julia-actions/julia-buildpkg@v1
+      - uses: julia-actions/julia-runtest@v1
+      - uses: julia-actions/julia-processcoverage@v1
+      - uses: codecov/codecov-action@v2
         with:
-          version: 1.6
-
-      # Runs a single command using the runners shell
-      - name: Unit Tests
-        run: |
-          julia --project -e 'using Pkg; Pkg.instantiate(); Pkg.build();'
-          julia --threads 2 --project --check-bounds=yes --depwarn=yes -e 'import Pkg; Pkg.test(; coverage=true)'
-      
-      - name: Codecov Upload
-        run: |
-          julia -e 'using Pkg; Pkg.add("Coverage"); using Coverage; Codecov.submit(process_folder());'
+          file: lcov.info

.github/workflows/compathelper.yml

@@ -2,20 +2,23 @@ name: CompatHelper
 on:
   schedule:
     - cron: '0 0 */7 * *'
-  
   workflow_dispatch:
-  
+
+permissions:
+  contents: write
+  pull-requests: write
+
 jobs:
   CompatHelper:
     runs-on: ubuntu-latest
-    
+
     steps:
       - name: Pkg.add("CompatHelper")
         run: julia -e 'using Pkg; Pkg.add("CompatHelper")'
-        
+    
       - name: CompatHelper.main()
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           COMPATHELPER_PRIV: ${{ secrets.DOCUMENTER_KEY }}
-          
+
         run: julia -e 'using CompatHelper; CompatHelper.main()'

.github/workflows/tagbot.yml

@@ -1,9 +1,25 @@
 name: TagBot
 on:
-  issue_comment:  # THIS BIT IS NEW
+  issue_comment:
     types:
       - created
   workflow_dispatch:
+    inputs:
+      lookback:
+        default: 3
+permissions:
+  actions: read
+  checks: read
+  contents: write
+  deployments: read
+  issues: read
+  discussions: read
+  packages: read
+  pages: read
+  pull-requests: read
+  repository-projects: read
+  security-events: read
+  statuses: read
 jobs:
   TagBot:
     if: github.event_name == 'workflow_dispatch' || github.actor == 'JuliaTagBot'

Project.toml

@@ -1,14 +1,14 @@
 name = "ChowLiuTrees"
 uuid = "be466665-d60c-4e0a-9ae9-070eb5e678a5"
 authors = ["Guy Van den Broeck <guyvdb@cs.ucla.edu>"]
-version = "0.1.4"
+version = "0.2.0"
 
 [deps]
 CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 
 [compat]
-CUDA = "3, 4"
+CUDA = "3, 4, 5"
 DataStructures = "0.17, 0.18"
 julia = "1.6"

README.md

@@ -1,6 +1,6 @@
 # ChowLiuTrees.jl
 
-[![Unit Tests](https://github.com/Juice-jl/ChowLiuTrees.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Juice-jl/ChowLiuTrees.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amain)  [![codecov](https://codecov.io/gh/Juice-jl/ChowLiuTrees.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/Juice-jl/ChowLiuTrees.jl)
+[![Unit Tests](https://github.com/Tractables/ChowLiuTrees.jl/workflows/Unit%20Tests/badge.svg)](https://github.com/Tractables/ChowLiuTrees.jl/actions?query=workflow%3A%22Unit+Tests%22+branch%3Amain)  [![codecov](https://codecov.io/gh/Tractables/ChowLiuTrees.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/Tractables/ChowLiuTrees.jl)
 
 This package provides an efficient implementation for learning [Chow-Liu Trees](https://en.wikipedia.org/wiki/Chow%E2%80%93Liu_tree) from binary and categorical data.
 

test/Project.toml

@@ -5,5 +5,5 @@ Jive = "ba5e3d4b-8524-549f-bc71-e76ad9e9deed"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [compat]
-CUDA = "3"
+CUDA = "3, 5"
 Jive = "0.2"