From 2e10f4f17cfac2ed5ea59ee529f5fe9385d1175b Mon Sep 17 00:00:00 2001 From: Michael Chungyoun Date: Mon, 25 Aug 2025 21:52:03 -0400 Subject: [PATCH] Add entry for flab --- datasets/flab.yaml | 35 +++++++++++++++++++++++++++++++++++ 1 file changed, 35 insertions(+) create mode 100644 datasets/flab.yaml diff --git a/datasets/flab.yaml b/datasets/flab.yaml new file mode 100644 index 000000000..dfa3651db --- /dev/null +++ b/datasets/flab.yaml @@ -0,0 +1,35 @@ +Name: FLAb: Fitness Landscapes for Antibodies +Description: FLAb is the largest publicly available therapeutic antibody dataset designed to train and benchmark protein AI models. It provides open-access, high-quality developability data on diverse therapeutic properties, including expression, thermostability, immunogenicity, aggregation, polyreactivity, binding affinity, and pharmacokinetics. +Documentation: https://github.com/Graylab/FLAb/blob/main/README.md +Contact: mchungy1@jhu.edu +ManagedBy: "[Jeffrey Gray Lab, Johns Hopkins University](https://graylab.jhu.edu/)" +UpdateFrequency: Any new public release of antibody developabilty data is deposited into FLAb +Tags: + - Protein language models + - Protein design + - Antibody engineering + - Therapeueutic antibodies + - Developability + - Machine learning + - Clinical stage therapeutics + - Biophysics +License: https://creativecommons.org/licenses/by/4.0/ +Citation: "FLAb was accessed on [DATE] at registry.opendata.aws/flab" +Resources: + - Description: Antibody developabiltiy data in CSV format + ARN: arn:aws:s3:::graylab-flab + Region: us-east-1 + Type: S3 Bucket +DataAtWork: + Tutorials: + - Title: FLAb tutorial: Benchmarking a protein language model for antibody expression prediction + NotebookURL: https://github.com/Graylab/FLAb/blob/main/examples/FLAb_ZeroShotExample_IgLM_Expression.ipynb + AuthorName: Michael Chungyoun + AuthorURL: https://www.linkedin.com/in/mfc12/ + Publications: + - Title: FLAb: Benchmarking deep learning methods for antibody fitness prediction + URL: https://doi.org/10.1101/2024.01.13.575504 + AuthorName: Michael Chungyoun and Jeffrey J. Gray + AuthorURL: https://www.linkedin.com/in/mfc12/ +ADXCategories: + - Healthcare & Life Sciences Data \ No newline at end of file