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1 parent a1c2f61 commit 80bb904Copy full SHA for 80bb904
nssp/delphi_nssp/run.py
@@ -45,6 +45,7 @@ def add_needed_columns(df, col_names=None):
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df = add_default_nancodes(df)
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return df
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+
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def logging(start_time, run_stats, logger):
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"""Boilerplate making logs."""
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elapsed_time_in_seconds = round(time.time() - start_time, 2)
@@ -140,7 +141,7 @@ def run_module(params, logger=None):
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elif geo == "hsanci":
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df = df[["hsa_nci_id", "val", "timestamp"]]
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df = df[df["hsa_nci_id"] != "All"]
- df = df.groupby(["hsa_nci_id", "timestamp"])['val'].min().reset_index()
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+ df = df.groupby(["hsa_nci_id", "timestamp"])["val"].min().reset_index()
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df = df.rename(columns={"hsa_nci_id": "geo_id"})
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else:
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df = df[df["county"] != "All"]
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