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‎manuscript/1-Introduction.md‎

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# 1 Introduction
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{type: iframe, title:1 Introduction, width:800, height:600, poster:/__w/GitHub_Automation_for_Scientists/GitHub_Automation_for_Scientists/manuscript/resources/chapt_screen_images/introduction.png}
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![](https://hutchdatascience.org/GitHub_Automation_for_Scientists/introduction.html)
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‎manuscript/2-Scientific-software-development-best-practices.md‎

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# 2 Scientific software development best practices
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![](https://hutchdatascience.org/GitHub_Automation_for_Scientists/scientific-software-development-best-practices.html)
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‎manuscript/3-Why-Automation.md‎

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# 3 Why Automation
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‎manuscript/4-GitHub-Actions-Fundamentals.md‎

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# 4 GitHub Actions Fundamentals
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‎manuscript/5-Automating-Re-running-Analyses.md‎

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# 5 Automating Re-running Analyses
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‎manuscript/6-GitHub-Action-Variables.md‎

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# 6 GitHub Action Variables
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‎manuscript/7-Troubleshooting-GitHub-Actions.md‎

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# 7 Troubleshooting GitHub Actions
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‎manuscript/8-Applying-GitHub-Actions-Examples.md‎

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# 8 Applying GitHub Actions Examples
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{type: iframe, title:8 Applying GitHub Actions Examples, width:800, height:600, poster:/__w/GitHub_Automation_for_Scientists/GitHub_Automation_for_Scientists/manuscript/resources/chapt_screen_images/applying-github-actions-examples.png}
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‎manuscript/9-References.md‎

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# 9 References
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‎manuscript/About-the-Authors.md‎

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# About the Authors
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