fix bug introduced with 9e524e2

Author: epnev

register_ROIs.m

@@ -58,7 +58,7 @@
 options_mc.correct_bidir = false;
 if align_flag
     options_mc.upd_template = false;
-    options_mc.boundary = 'zero';
+    options_mc.boundary = 'copy';
     [~,global_shift] = normcorre(template2,options_mc,template1);
     %global_shift(1).diff = 0*global_shift(1).diff;
 

utilities/determine_search_location.m

@@ -93,13 +93,13 @@
                else
                    d33 = min((max_size/2)^2,max((min_size/2)^2,D(3,3)));
                    ind_t = sqrt((cor*V(:,1)).^2/d11 + (cor*V(:,2)).^2/d22 + (cor*V(:,3)).^2/d33)<=dist;       % search indeces for each component
-               end               
+               end
+               ind_temp = sparse(idx,1,ind_t,d,1); 
+               IND(:,i) = logical(ind_temp); 
            case 'dilate'
                A_temp = imdilate(reshape(full(A(:,i)), [d1,d2,d3]), expandCore);
-               ind_t = A_temp(:)>0;
+               IND(:,i) = A_temp(:)>0;
        end
-       ind_temp = sparse(idx,1,ind_t,d,1); 
-       IND(:,i) = logical(ind_temp);       
    end
 end