Update aux.go sleep after singularity

dciangot · web-flow · commit 292897418a80 · 2024-07-18T18:11:33.000+02:00
give thread time write status
diff --git a/pkg/slurm/aux.go b/pkg/slurm/aux.go
@@ -466,7 +466,7 @@ func produceSLURMScript(
 			stringToBeWritten += "\n" + strings.Join(singularityCommand.singularityCommand[:], " ") + " " +
 				"/bin/sh" + " /tmp/" + "command_" + singularityCommand.containerName + ".sh" +
 				" &> " + path + "/" + singularityCommand.containerName + ".out; " +
-				"echo $? > " + path + "/" + singularityCommand.containerName + ".status &"
+				"echo $? > " + path + "/" + singularityCommand.containerName + ".status; sleep 30 &"
 		}
 	}
 

Original file line number	Diff line number	Diff line change
`@@ -466,7 +466,7 @@ func produceSLURMScript(`
`466`	`466`	`stringToBeWritten += "\n" + strings.Join(singularityCommand.singularityCommand[:], " ") + " " +`
`467`	`467`	`"/bin/sh" + " /tmp/" + "command_" + singularityCommand.containerName + ".sh" +`
`468`	`468`	`" &> " + path + "/" + singularityCommand.containerName + ".out; " +`
`469`		`- "echo $? > " + path + "/" + singularityCommand.containerName + ".status &"`
	`469`	`+ "echo $? > " + path + "/" + singularityCommand.containerName + ".status; sleep 30 &"`
`470`	`470`	`}`
`471`	`471`	`}`
`472`	`472`