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Add initial package and configuration files for FHIR info Gateway
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6 files changed

+151
-2
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6 files changed

+151
-2
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‎config.yaml

Lines changed: 2 additions & 2 deletions
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@@ -1,5 +1,5 @@
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projectName: platform
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image: jembi/platform:3.0.0-beta
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image: jembi/platform:latest
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logPath: /tmp/logs
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packages:
@@ -26,6 +26,7 @@ packages:
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- database-postgres
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- reprocess-mediator
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- fhir-ig-importer
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- fhir-info-gateway
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profiles:
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- name: cdr-dw
@@ -75,4 +76,3 @@ profiles:
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- openhim-mapping-mediator
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envFiles:
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- mpi.env
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‎fhir-info-gateway/docker-compose.dev.yml

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version: '3.9'
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services:
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fhir-info-gateway:
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ports:
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- target: 8080
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published: 8880
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mode: host

‎fhir-info-gateway/docker-compose.yml

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version: "3.9"
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services:
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fhir-info-gateway:
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image: ${FHIR_INFO_GATEWAY_IMAGE}
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networks:
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openhim:
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keycloak:
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default:
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environment:
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TOKEN_ISSUER: ${KC_API_URL}/realms/${KC_REALM_NAME}
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ACCESS_CHECKER: ${ACCESS_CHECKER}
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PROXY_TO: ${MPI_PROXY_URL}
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BACKEND_TYPE: ${BACKEND_TYPE}
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RUN_MODE: ${RUN_MODE}
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deploy:
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replicas: ${FHIR_INFO_GATEWAY_INSTANCES}
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placement:
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max_replicas_per_node: ${FHIR_INFO_GATEWAY_MAX_REPLICAS_PER_NODE}
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resources:
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limits:
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cpus: ${FHIR_INFO_GATEWAY_CPU_LIMIT}
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memory: ${FHIR_INFO_GATEWAY_MEMORY_LIMIT}
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reservations:
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cpus: ${FHIR_INFO_GATEWAY_CPU_RESERVE}
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memory: ${FHIR_INFO_GATEWAY_MEMORY_RESERVE}
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networks:
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openhim:
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name: openhim_public
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external: true
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keycloak:
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name: keycloak_public
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external: true
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default:

‎fhir-info-gateway/package-metadata.json

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{
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"id": "fhir-info-gateway",
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"name": "FHIR Info Gateway",
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"description": "Implement the FHIR Info Gateway as a platform package which sits between the OpenHIM and MPI Mediator and any other direct FHIR access",
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"type": "infrastructure",
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"version": "0.0.1",
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"dependencies": ["mpi-mediator"],
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"environmentVariables": {
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"MPI_PROXY_URL": "http://localhost:5001",
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"ACCESS_CHECKER": "patient",
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"RUN_MODE": "DEV",
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"FHIR_INFO_GATEWAY_IMAGE": "jembi/fhir-info-gateway:v0.0.1",
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"BACKEND_TYPE": "HAPI",
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"KC_API_URL": "http://identity-access-manager-keycloak:9088",
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"KC_REALM_NAME": "platform-realm",
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"FHIR_INFO_GATEWAY_INSTANCES": "1",
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"FHIR_INFO_GATEWAY_MAX_REPLICAS_PER_NODE": "1",
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"FHIR_INFO_GATEWAY_CPU_LIMIT": "0",
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"FHIR_INFO_GATEWAY_MEMORY_LIMIT": "2G",
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"FHIR_INFO_GATEWAY_CPU_RESERVE": "0.05",
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"FHIR_INFO_GATEWAY_MEMORY_RESERVE": "500M"
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}
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}

‎fhir-info-gateway/swarm.sh

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#!/bin/bash
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declare ACTION=""
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declare MODE=""
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declare COMPOSE_FILE_PATH=""
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declare UTILS_PATH=""
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declare SERVICE_NAMES=()
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declare STACK="fhir-info-gateway"
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function init_vars() {
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ACTION=$1
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MODE=$2
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COMPOSE_FILE_PATH=$(
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cd "$(dirname "${BASH_SOURCE[0]}")" || exit
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pwd -P
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)
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UTILS_PATH="${COMPOSE_FILE_PATH}/../utils"
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SERVICE_NAMES=(
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"fhir-info-gateway"
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)
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readonly ACTION
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readonly MODE
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readonly COMPOSE_FILE_PATH
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readonly UTILS_PATH
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readonly SERVICE_NAMES
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readonly STACK
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}
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# shellcheck disable=SC1091
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function import_sources() {
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source "${UTILS_PATH}/docker-utils.sh"
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source "${UTILS_PATH}/log.sh"
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}
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function initialize_package() {
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local package_dev_compose_filename=""
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if [[ "${MODE}" == "dev" ]]; then
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log info "Running package in DEV mode"
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package_dev_compose_filename="docker-compose.dev.yml"
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else
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log info "Running package in PROD mode"
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fi
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(
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docker::deploy_service $STACK "${COMPOSE_FILE_PATH}" "docker-compose.yml" "$package_dev_compose_filename"
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) || {
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log error "Failed to deploy package"
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exit 1
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}
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}
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function destroy_package() {
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docker::stack_destroy "$STACK"
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}
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main() {
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init_vars "$@"
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import_sources
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if [[ "${ACTION}" == "init" ]] || [[ "${ACTION}" == "up" ]]; then
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log info "Running package in Single node mode"
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initialize_package
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elif [[ "${ACTION}" == "down" ]]; then
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log info "Scaling down package"
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docker::scale_services "$STACK" 0
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elif [[ "${ACTION}" == "destroy" ]]; then
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log info "Destroying package"
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destroy_package
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else
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log error "Valid options are: init, up, down, or destroy"
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fi
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}
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main "$@"

‎interoperability-layer-openhim/docker-compose.yml

Lines changed: 4 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -24,6 +24,10 @@ services:
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- api_openid_clientId=${KC_OPENHIM_CLIENT_ID}
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- api_openid_clientSecret=${KC_OPENHIM_CLIENT_SECRET}
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- openhimConsoleBaseUrl=${OPENHIM_CONSOLE_BASE_URL}
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- authentication_enableJWTAuthentication=true
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- authentication_jwt_jwksUri=${KC_API_URL}/realms/${KC_REALM_NAME}/protocol/openid-connect/certs
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- authentication_jwt_algorithms=RS256
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- authentication_jwt_issuer=${KC_FRONTEND_URL}/realms/${KC_REALM_NAME}
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deploy:
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replicas: ${OPENHIM_CORE_INSTANCES}
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placement:

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