From dc261d37c7e33587925083ace5c3d74f977aeb2e Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 11 Aug 2025 17:03:46 -0400 Subject: [PATCH 1/2] Update 02-defining-reproducibility.Rmd testing the ottrpal version of borrow chapter with a test base_ottr image --- 02-defining-reproducibility.Rmd | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/02-defining-reproducibility.Rmd b/02-defining-reproducibility.Rmd index da44bac..e852950 100644 --- a/02-defining-reproducibility.Rmd +++ b/02-defining-reproducibility.Rmd @@ -5,11 +5,11 @@ ottrpal::set_knitr_image_path() # Defining Reproducibility -_If you've not previously read through the `defining reproducibility` chapter in our introductory course, we recommend you read through it here; otherwise feel free to skip to the next chapter._ +If you've not previously read through the `defining reproducibility` chapter in our introductory course, we recommend you read through it here; otherwise feel free to skip to the next chapter. ```{r, echo = FALSE, results='asis'} -cow::borrow_chapter( +ottrpal::borrow_chapter( doc_path = "02-defining-reproducibility.Rmd", repo_name = "jhudsl/Reproducibility_in_Cancer_Informatics", remove_h1 = TRUE From cbfde1fb5af9527e64636b5cd7467460b3623ae2 Mon Sep 17 00:00:00 2001 From: Kate Isaac <41767733+kweav@users.noreply.github.com> Date: Mon, 11 Aug 2025 17:04:37 -0400 Subject: [PATCH 2/2] Update config_automation.yml updating to the test docker image --- config_automation.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/config_automation.yml b/config_automation.yml index 3c7941e..349f564 100644 --- a/config_automation.yml +++ b/config_automation.yml @@ -37,4 +37,4 @@ make-book-txt: true # What docker image should be used for rendering? # The default is jhudsl/base_ottr:main -rendering-docker-image: 'jhudsl/base_ottr:main' +rendering-docker-image: 'jhudsl/base_ottr:testBC'