chore: update dependencies

lpatiny · lpatiny · commit 70f4adeb35d5 · 2025-08-18T14:25:05.000+02:00
diff --git a/package.json b/package.json
@@ -38,22 +38,22 @@
   },
   "homepage": "https://github.com/mljs/signal-processing#readme",
   "devDependencies": {
-    "@vitest/coverage-v8": "^3.2.3",
+    "@vitest/coverage-v8": "^3.2.4",
     "@zakodium/tsconfig": "^1.0.2",
-    "eslint": "^9.29.0",
-    "eslint-config-cheminfo-typescript": "^18.0.1",
+    "eslint": "^9.33.0",
+    "eslint-config-cheminfo-typescript": "^19.0.0",
     "jest-matcher-deep-close-to": "^3.0.2",
-    "prettier": "^3.5.3",
+    "prettier": "^3.6.2",
     "rimraf": "^6.0.1",
-    "typescript": "^5.8.3",
+    "typescript": "^5.9.2",
     "typescript-json-schema": "^0.65.1",
-    "vitest": "^3.2.3"
+    "vitest": "^3.2.4"
   },
   "dependencies": {
     "baselines": "^1.1.9",
     "cheminfo-types": "^1.8.1",
     "ml-gsd": "^13.0.1",
     "ml-savitzky-golay-generalized": "^4.2.0",
-    "ml-spectra-processing": "^14.12.0"
+    "ml-spectra-processing": "^14.17.0"
   }
 }
diff --git a/src/FilterXYType.ts b/src/FilterXYType.ts
@@ -1,26 +1,26 @@
 import type {
   AirPLSBaselineFilter,
+  CalibrateFilter,
   CenterMeanFilter,
   CenterMedianFilter,
   DivideBySDFilter,
   EnsureGrowingFilter,
   EquallySpacedFilter,
+  FilterXFilter,
   FirstDerivativeFilter,
-  IterativePolynomialBaselineFilter,
   FromToFilter,
+  IterativePolynomialBaselineFilter,
   NormedFilter,
+  ParetoNormalizationFilter,
   RescaleFilter,
   RollingAverageBaselineFilter,
   RollingBallBaselineFilter,
   RollingMedianBaselineFilter,
   SavitzkyGolayFilter,
   SecondDerivativeFilter,
   ThirdDerivativeFilter,
-  FilterXFilter,
   XFunctionFilter,
   YFunctionFilter,
-  CalibrateFilter,
-  ParetoNormalizationFilter,
 } from './filters/filters.ts';
 import type { ReverseIfNeededFilter } from './filters/x/reverseIfNeeded.ts';
 
diff --git a/src/__tests__/filterMatrix.test.ts b/src/__tests__/filterMatrix.test.ts
@@ -1,4 +1,4 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import type { FilterMatrixType } from '../FilterMatrixType.ts';
 import { filterMatrix } from '../index.ts';
diff --git a/src/__tests__/filterXY.test.ts b/src/__tests__/filterXY.test.ts
@@ -1,4 +1,4 @@
-import { describe, it, expect } from 'vitest';
+import { describe, expect, it } from 'vitest';
 
 import type { FilterXYType } from '../FilterXYType.ts';
 import linear from '../filters/__tests__/data/linear.ts';
@@ -12,6 +12,7 @@ describe('filterXY', () => {
     ];
 
     const result = filterXY(linear, filters);
+
     expect(result.data).toStrictEqual({
       x: Float64Array.from([2, 3, 4, 5, 6, 7, 8]),
       y: Float64Array.from([-1, 0, 1, 2, 1, 0, -1]),
@@ -25,6 +26,7 @@ describe('filterXY', () => {
       y: Float64Array.from([1, 2, 3, 4, 1]),
     };
     const result = filterXY(data, filters);
+
     expect(result.data).toStrictEqual({
       x: Float64Array.from([1, 2, 3, 4, 5]),
       y: Float64Array.from([1, 2, 3, 4, 1]),
@@ -38,6 +40,7 @@ describe('filterXY', () => {
       y: Float64Array.from([1, 2, 3, 4, 1]),
     };
     const result = filterXY(data, filters);
+
     expect(result.data).toStrictEqual({
       x: Float64Array.from([1, 2, 3, 4, 5]),
       y: Float64Array.from([1, 4, 3, 2, 1]),
diff --git a/src/filters/baseline/__tests__/airPLSBaseline.test.ts b/src/filters/baseline/__tests__/airPLSBaseline.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import baseline from '../../__tests__/data/baseline.ts';
 import { airPLSBaseline } from '../airPLSBaseline.ts';
 
 test('airPLSBaseline', () => {
   const result = airPLSBaseline(baseline);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([0, 0, 0, 0, 4, 0, 0, 0, 0]),
diff --git a/src/filters/baseline/__tests__/iterativePolynomialBaseline.test.ts b/src/filters/baseline/__tests__/iterativePolynomialBaseline.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import baseline from '../../__tests__/data/baseline.ts';
 import { iterativePolynomialBaseline } from '../iterativePolynomialBaseline.ts';
 
 test('iterativePolynomialBaseline', () => {
   const result = iterativePolynomialBaseline(baseline);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([
diff --git a/src/filters/baseline/__tests__/rollingAverageBaseline.test.ts b/src/filters/baseline/__tests__/rollingAverageBaseline.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import baseline from '../../__tests__/data/baseline.ts';
 import { rollingAverageBaseline } from '../rollingAverageBaseline.ts';
 
 test('rollingAverageBaseline', () => {
   const result = rollingAverageBaseline(baseline);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([0, 0, 0, 0, 2, -2, 0, 0, 0]),
diff --git a/src/filters/baseline/__tests__/rollingBallBaseline.test.ts b/src/filters/baseline/__tests__/rollingBallBaseline.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import baseline from '../../__tests__/data/baseline.ts';
 import { rollingBallBaseline } from '../rollingBallBaseline.ts';
 
 test('rollingBallBaseline', () => {
   const result = rollingBallBaseline(baseline);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([0, 0, 0, 0, 4, 0, 0, 0, 0]),
diff --git a/src/filters/baseline/__tests__/rollingMedianBaseline.test.ts b/src/filters/baseline/__tests__/rollingMedianBaseline.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import baseline from '../../__tests__/data/baseline.ts';
 import { rollingMedianBaseline } from '../rollingMedianBaseline.ts';
 
 test('rollingMedianBaseline', () => {
   const result = rollingMedianBaseline(baseline);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([0, 0, 0, 0, 4, 0, 0, 0, 0]),
diff --git a/src/filters/scaling/__tests__/centerMean.test.ts b/src/filters/scaling/__tests__/centerMean.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { centerMean } from '../centerMean.ts';
 
 test('centerMean', () => {
   const result = centerMean(linear);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([
diff --git a/src/filters/scaling/__tests__/centerMedian.test.ts b/src/filters/scaling/__tests__/centerMedian.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { centerMedian } from '../centerMedian.ts';
 
 test('centerMedian', () => {
   const result = centerMedian(linear);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([-2, -1, 0, 1, 2, 1, 0, -1, -2]),
diff --git a/src/filters/scaling/__tests__/divideBySD.test.ts b/src/filters/scaling/__tests__/divideBySD.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { divideBySD } from '../divideBySD.ts';
 
 test('divideBySD', () => {
   const result = divideBySD(linear);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([
diff --git a/src/filters/scaling/__tests__/normed.test.ts b/src/filters/scaling/__tests__/normed.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { normed } from '../normed.ts';
 
 test('normed', () => {
   const result = normed(linear, { algorithm: 'max', value: 10 });
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([2, 4, 6, 8, 10, 8, 6, 4, 2]),
diff --git a/src/filters/scaling/__tests__/paretoNormalization.test.ts b/src/filters/scaling/__tests__/paretoNormalization.test.ts
@@ -1,4 +1,4 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import { paretoNormalization } from '../paretoNormalization.ts';
 
@@ -9,6 +9,7 @@ test('paretoNormalization', () => {
   };
 
   const result = paretoNormalization(data);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([2, 3, 4]),
     y: Float64Array.from([
diff --git a/src/filters/scaling/__tests__/rescale.test.ts b/src/filters/scaling/__tests__/rescale.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { rescale } from '../rescale.ts';
 
 test('rescale', () => {
   const result = rescale(linear, { min: 1, max: 2 });
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([1, 1.25, 1.5, 1.75, 2, 1.75, 1.5, 1.25, 1]),
diff --git a/src/filters/scaling/__tests__/yFunction.test.ts b/src/filters/scaling/__tests__/yFunction.test.ts
@@ -1,28 +1,33 @@
-import { describe, it, expect } from 'vitest';
+import { describe, expect, it } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { yFunction } from '../yFunction.ts';
 
 describe('yFunction', () => {
   it('nothing to do', () => {
     const result = yFunction(linear, {});
+
     expect(result.data).toMatchCloseTo({
       y: [1, 2, 3, 4, 5, 4, 3, 2, 1],
     });
   });
+
   it('y+2', () => {
     const result = yFunction(linear, {
       function: 'y+2',
     });
+
     expect(result.data).toMatchCloseTo({
       x: [1, 2, 3, 4, 5, 6, 7, 8, 9],
       y: [3, 4, 5, 6, 7, 6, 5, 4, 3],
     });
   });
+
   it('pow(y,2)', () => {
     const result = yFunction(linear, {
       function: 'pow(y,2)',
     });
+
     expect(result.data).toMatchCloseTo({
       x: [1, 2, 3, 4, 5, 6, 7, 8, 9],
       y: [1, 4, 9, 16, 25, 16, 9, 4, 1],
diff --git a/src/filters/sg/__tests__/firstDerivative.test.ts b/src/filters/sg/__tests__/firstDerivative.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { firstDerivative } from '../firstDerivative.ts';
 
 test('firstDerivative', () => {
   const result = firstDerivative(linear);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([
diff --git a/src/filters/sg/__tests__/savitzkyGolay.test.ts b/src/filters/sg/__tests__/savitzkyGolay.test.ts
@@ -1,4 +1,4 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { savitzkyGolay } from '../savitzkyGolay.ts';
@@ -7,6 +7,7 @@ test('savitzkyGolay', () => {
   const result = savitzkyGolay(linear, {
     derivative: 1,
   });
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([
diff --git a/src/filters/sg/__tests__/secondDerivative.test.ts b/src/filters/sg/__tests__/secondDerivative.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { secondDerivative } from '../secondDerivative.ts';
 
 test('secondDerivative', () => {
   const result = secondDerivative(linear);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([
diff --git a/src/filters/sg/__tests__/thirdDerivate.test.ts b/src/filters/sg/__tests__/thirdDerivate.test.ts
@@ -1,10 +1,11 @@
-import { test, expect } from 'vitest';
+import { expect, test } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { thirdDerivative } from '../thirdDerivative.ts';
 
 test('thirdDerivative', () => {
   const result = thirdDerivative(linear);
+
   expect(result.data).toMatchCloseTo({
     x: Float64Array.from([1, 2, 3, 4, 5, 6, 7, 8, 9]),
     y: Float64Array.from([0, 0, 0, 0, 0, 0, 0, 0, 0]),
diff --git a/src/filters/x/__tests__/calibrateX.test.ts b/src/filters/x/__tests__/calibrateX.test.ts
@@ -1,4 +1,4 @@
-import { describe, it, expect } from 'vitest';
+import { describe, expect, it } from 'vitest';
 
 import { calibrateX } from '../calibrateX.ts';
 
@@ -10,6 +10,7 @@ describe('calibrateX', () => {
     };
 
     const shifted = calibrateX(data);
+
     expect(shifted.data.x).toMatchCloseTo(
       Float64Array.from([-6, -5, -4, -3, -2, -1, 0, 1, 2, 3, 4, 5, 6]),
     );
@@ -21,6 +22,7 @@ describe('calibrateX', () => {
       x: Float64Array.from([0, 1, 2, 3]),
       y: Float64Array.from([1, 1, 5, 1]),
     };
+
     expect(() => calibrateX(data, { from: 1, to: 10 })).toThrow(
       'Window size is higher than the data lengt',
     );
@@ -77,6 +79,7 @@ describe('calibrateX', () => {
       from: 1,
       to: 10,
     });
+
     // because we look for the real maximum it is not exactly 2
     expect(shifted.data.x).toMatchCloseTo(
       Float64Array.from([2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14]),
@@ -112,6 +115,7 @@ describe('calibrateX', () => {
       gsd: gsdOptions,
       nbPeaks: 2,
     });
+
     // because we look for the real maximum it is not exactly 2
     expect(shifted.data.x).toMatchCloseTo(
       Float64Array.from([
diff --git a/src/filters/x/__tests__/ensureGrowing.test.ts b/src/filters/x/__tests__/ensureGrowing.test.ts
@@ -1,4 +1,4 @@
-import { describe, it, expect } from 'vitest';
+import { describe, expect, it } from 'vitest';
 
 import { ensureGrowing } from '../ensureGrowing.ts';
 
@@ -7,6 +7,7 @@ import linear from './data/nonGrowing.ts';
 describe('ensureGrowing', () => {
   it('nothing to do', () => {
     const result = ensureGrowing(linear);
+
     expect(result.data).toMatchCloseTo({
       x: [1, 3, 5, 6, 7, 8, 9],
       y: [1, 3, 5, 4, 3, 2, 1],
diff --git a/src/filters/x/__tests__/equallySpaced.test.ts b/src/filters/x/__tests__/equallySpaced.test.ts
@@ -1,4 +1,4 @@
-import { describe, it, expect } from 'vitest';
+import { describe, expect, it } from 'vitest';
 
 import linear from '../../__tests__/data/linear.ts';
 import { equallySpaced } from '../equallySpaced.ts';
@@ -9,6 +9,7 @@ describe('equallySpaced', () => {
       exclusions: [{ from: 2, to: 7 }],
       numberOfPoints: 5,
     });
+
     expect(result.data).toMatchCloseTo({
       x: [1, 2, 7, 8, 9],
       y: [1, 2, 3, 2, 1],
diff --git a/src/filters/x/__tests__/filterX.test.ts b/src/filters/x/__tests__/filterX.test.ts
diff --git a/src/filters/x/__tests__/fromTo.test.ts b/src/filters/x/__tests__/fromTo.test.ts
diff --git a/src/filters/x/__tests__/setMaxX.test.ts b/src/filters/x/__tests__/setMaxX.test.ts
diff --git a/src/filters/x/__tests__/setMinX.test.ts b/src/filters/x/__tests__/setMinX.test.ts
diff --git a/src/filters/x/__tests__/xFunction.test.ts b/src/filters/x/__tests__/xFunction.test.ts
diff --git a/src/filters/x/calibrateX.ts b/src/filters/x/calibrateX.ts
diff --git a/src/filters/y/__tests__/setMaxY.test.ts b/src/filters/y/__tests__/setMaxY.test.ts
diff --git a/src/filters/y/__tests__/setMinY.test.ts b/src/filters/y/__tests__/setMinY.test.ts

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,4 @@`
`1`		`-import { test, expect } from 'vitest';`
	`1`	`+import { expect, test } from 'vitest';`
`2`	`2`
`3`	`3`	`import type { FilterMatrixType } from '../FilterMatrixType.ts';`
`4`	`4`	`import { filterMatrix } from '../index.ts';`