MAINT: Update code credit (#13093)

Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Co-authored-by: Eric Larson <larson.eric.d@gmail.com>

Author: github-actions[bot]

.mailmap

@@ -86,6 +86,7 @@ Eduard Ort <eduardxort@gmail.com> examplename <e.ort@vu.nl>
 Ellen Lau <ellenlau@umd.edu> ellenlau <ellenlau@umd.edu>
 Emily Stephen <emilyps14@gmail.com> Emily P. Stephen <emilyps14@gmail.com>
 Emily Stephen <emilyps14@gmail.com> emilyps14 <emilyps14@gmail.com>
+Emma Bailey <93327939+emma-bailey@users.noreply.github.com> emma-bailey <93327939+emma-bailey@users.noreply.github.com>
 Enrico Varano <enricovarano@gmail.com> enricovara <69973551+enricovara@users.noreply.github.com>
 Enzo Altamiranda <enzo.alt@gmail.com> enzo <enzo.alt@gmail.com>
 Eric Larson <larson.eric.d@gmail.com> Eric Larson <larson.eric.d@gmail.com>
@@ -315,6 +316,7 @@ Sara Sommariva <sommariva@dima.unige.it> sarasommariva <sommariva@dima.unige.it>
 Sebastien Treguer <sfox@riseup.net> DataFox <sfox@riseup.net>
 Sena Er <2799280+sena-neuro@users.noreply.github.com> Sena <2799280+sena-neuro@users.noreply.github.com>
 Senwen Deng <36327760+snwnde@users.noreply.github.com> Senwen DENG <36327760+snwnde@users.noreply.github.com>
+Shristi Baral <shristi.baral@aalto.fi> Shristi Baral <shristi.baral@aalto.fi>
 Silvia Cotroneo <78911192+sfc-neuro@users.noreply.github.com> sfc-neuro <78911192+sfc-neuro@users.noreply.github.com>
 Simon Kern <simon.kern@online.de> Simon Kern <14980558+skjerns@users.noreply.github.com>
 Simon Kern <simon.kern@online.de> skjerns <14980558+skjerns@users.noreply.github.com>

doc/changes/names.inc

@@ -256,7 +256,7 @@
 .. _Romain Derollepot: https://github.com/rderollepot
 .. _Romain Trachel: https://fr.linkedin.com/in/trachelr
 .. _Roman Goj: https://romanmne.blogspot.co.uk
-.. _Ross Maddox: https://www.urmc.rochester.edu/labs/maddox-lab.aspx
+.. _Ross Maddox: https://medicine.umich.edu/dept/khri/ross-maddox-phd
 .. _Rotem Falach: https://github.com/Falach
 .. _Roy Eric Wieske: https://github.com/Randomidous
 .. _Sammi Chekroud: https://github.com/schekroud

doc/conf.py

@@ -644,6 +644,7 @@ def fix_sklearn_inherited_docstrings(app, what, name, obj, options, lines):
 linkcheck_ignore = [  # will be compiled to regex
     # 403 Client Error: Forbidden
     "https://doi.org/10.1002/",  # onlinelibrary.wiley.com/doi/10.1002/hbm
+    "https://doi.org/10.1016/",  # neuroimage
     "https://doi.org/10.1021/",  # pubs.acs.org/doi/abs
     "https://doi.org/10.1073/",  # pnas.org
     "https://doi.org/10.1093/",  # academic.oup.com/sleep/
@@ -667,10 +668,11 @@ def fix_sklearn_inherited_docstrings(app, what, name, obj, options, lines):
     r"https://scholar.google.com/scholar\?cites=12188330066413208874&as_ylo=2014",
     r"https://scholar.google.com/scholar\?cites=1521584321377182930&as_ylo=2013",
     "https://www.research.chop.edu/imaging",
-    "http://prdownloads.sourceforge.net/optipng/optipng-0.7.8-win64.zip?download",
+    "http://prdownloads.sourceforge.net/optipng",
     "https://sourceforge.net/projects/aespa/files/",
     "https://sourceforge.net/projects/ezwinports/files/",
     "https://www.mathworks.com/products/compiler/matlab-runtime.html",
+    "https://medicine.umich.edu/dept/khri/ross-maddox-phd",
     # 500 server error
     "https://openwetware.org/wiki/Beauchamp:FreeSurfer",
     # 503 Server error
@@ -694,6 +696,8 @@ def fix_sklearn_inherited_docstrings(app, what, name, obj, options, lines):
     "http://ilabs.washington.edu",
     "https://psychophysiology.cpmc.columbia.edu",
     "https://erc.easme-web.eu",
+    # Not rendered by linkcheck builder
+    r"ides\.html",
 ]
 linkcheck_anchors = False  # saves a bit of time
 linkcheck_timeout = 15  # some can be quite slow

doc/sphinxext/credit_tools.py

@@ -39,6 +39,16 @@
 
 # Allowed singletons
 single_names = "btkcodedev buildqa sviter Akshay".split()
+# Surnames where we have more than one distinct contributor:
+name_counts = dict(
+    Bailey=2,
+    Das=2,
+    Drew=2,
+    Li=2,
+    Peterson=2,
+    Wong=2,
+    Zhang=2,
+)
 # Exceptions, e.g., abbrevitaions in first/last name or all-caps
 exceptions = [
     "T. Wang",
@@ -217,16 +227,6 @@ def generate_credit_rst(app=None, *, verbose=False):
         )
 
     # Check for duplicate names based on last name, and also singleton names.
-    # Below are surnames where we have more than one distinct contributor:
-    name_counts = dict(
-        Das=2,
-        Drew=2,
-        Li=2,
-        Peterson=2,
-        Wong=2,
-        Zhang=2,
-    )
-    # Below are allowed singleton names
     last_map = defaultdict(lambda: set())
     bad_names = set()
     for these_stats in stats.values():
@@ -245,10 +245,11 @@ def generate_credit_rst(app=None, *, verbose=False):
         if len(names) > name_counts.get(last, 1):
             bad_names.append(f"Duplicates:    {sorted(names)}")
     if bad_names:
-        raise RuntimeError(
-            "Unexpected possible duplicates or bad names found:\n"
-            + "\n".join(bad_names)
+        what = (
+            "Unexpected possible duplicates or bad names found, "
+            f"consider modifying {'/'.join(Path(__file__).parts[-3:])}:\n"
         )
+        raise RuntimeError(what + "\n".join(bad_names))
 
     unknown_emails = set(
         email
@@ -258,9 +259,8 @@ def generate_credit_rst(app=None, *, verbose=False):
         and "dependabot[bot]" not in email
         and "github-actions[bot]" not in email
     )
-    assert len(unknown_emails) == 0, "Unknown emails\n" + "\n".join(
-        sorted(unknown_emails)
-    )
+    what = "Unknown emails, consider adding to .mailmap:\n"
+    assert len(unknown_emails) == 0, what + "\n".join(sorted(unknown_emails))
 
     logger.info("Biggest included commits/PRs:")
     commits = dict(

doc/sphinxext/prs/12071.json

@@ -0,0 +1,67 @@
+{
+  "merge_commit_sha": "aca49655b10fc17679142e07c5d46659be1099da",
+  "authors": [
+    {
+      "n": "Marijn van Vliet",
+      "e": "w.m.vanvliet@gmail.com"
+    },
+    {
+      "n": "pre-commit-ci[bot]",
+      "e": "66853113+pre-commit-ci[bot]@users.noreply.github.com"
+    },
+    {
+      "n": "Daniel McCloy",
+      "e": "dan@mccloy.info"
+    }
+  ],
+  "changes": {
+    "doc/changes/devel/12071.newfeature.rst": {
+      "a": 1,
+      "d": 0
+    },
+    "mne/epochs.py": {
+      "a": 2,
+      "d": 0
+    },
+    "mne/evoked.py": {
+      "a": 2,
+      "d": 0
+    },
+    "mne/viz/_figure.py": {
+      "a": 3,
+      "d": 3
+    },
+    "mne/viz/_mpl_figure.py": {
+      "a": 1,
+      "d": 1
+    },
+    "mne/viz/evoked.py": {
+      "a": 12,
+      "d": 1
+    },
+    "mne/viz/tests/test_raw.py": {
+      "a": 14,
+      "d": 25
+    },
+    "mne/viz/tests/test_topo.py": {
+      "a": 35,
+      "d": 1
+    },
+    "mne/viz/tests/test_utils.py": {
+      "a": 69,
+      "d": 0
+    },
+    "mne/viz/topo.py": {
+      "a": 81,
+      "d": 15
+    },
+    "mne/viz/ui_events.py": {
+      "a": 20,
+      "d": 0
+    },
+    "mne/viz/utils.py": {
+      "a": 108,
+      "d": 63
+    }
+  }
+}

doc/sphinxext/prs/12656.json

@@ -0,0 +1,35 @@
+{
+  "merge_commit_sha": "3c6a054093d305a98757a97398e5e34988a3aced",
+  "authors": [
+    {
+      "n": "Qian Chu",
+      "e": null
+    }
+  ],
+  "changes": {
+    "doc/changes/devel/12656.bugfix.rst": {
+      "a": 1,
+      "d": 0
+    },
+    "mne/export/_brainvision.py": {
+      "a": 7,
+      "d": 0
+    },
+    "mne/export/_edf.py": {
+      "a": 4,
+      "d": 1
+    },
+    "mne/export/_eeglab.py": {
+      "a": 11,
+      "d": 5
+    },
+    "mne/export/_export.py": {
+      "a": 7,
+      "d": 1
+    },
+    "mne/export/tests/test_export.py": {
+      "a": 82,
+      "d": 7
+    }
+  }
+}

doc/sphinxext/prs/12828.json

@@ -0,0 +1,43 @@
+{
+  "merge_commit_sha": "176f64ff061136cf5628d76535a8d7e2e164d399",
+  "authors": [
+    {
+      "n": "Shristi Baral",
+      "e": null
+    },
+    {
+      "n": "shristi",
+      "e": "shristi.baral@aalto.fi"
+    },
+    {
+      "n": "Eric Larson",
+      "e": "larson.eric.d@gmail.com"
+    },
+    {
+      "n": "Daniel McCloy",
+      "e": "dan@mccloy.info"
+    }
+  ],
+  "changes": {
+    "doc/changes/devel/12828.bugfix.rst": {
+      "a": 1,
+      "d": 0
+    },
+    "doc/changes/names.inc": {
+      "a": 1,
+      "d": 0
+    },
+    "mne/source_estimate.py": {
+      "a": 7,
+      "d": 0
+    },
+    "mne/utils/docs.py": {
+      "a": 6,
+      "d": 0
+    },
+    "mne/viz/_3d.py": {
+      "a": 13,
+      "d": 3
+    }
+  }
+}

doc/sphinxext/prs/12910.json

@@ -0,0 +1,51 @@
+{
+  "merge_commit_sha": "1d2635f84a55785c3531cfe4027eda3820a7fb31",
+  "authors": [
+    {
+      "n": "Thomas S. Binns",
+      "e": "t.s.binns@outlook.com"
+    },
+    {
+      "n": "Daniel McCloy",
+      "e": "dan@mccloy.info"
+    },
+    {
+      "n": "Eric Larson",
+      "e": "larson.eric.d@gmail.com"
+    }
+  ],
+  "changes": {
+    "doc/changes/devel/12910.newfeature.rst": {
+      "a": 1,
+      "d": 0
+    },
+    "mne/time_frequency/multitaper.py": {
+      "a": 10,
+      "d": 0
+    },
+    "mne/time_frequency/tests/test_tfr.py": {
+      "a": 195,
+      "d": 26
+    },
+    "mne/time_frequency/tfr.py": {
+      "a": 249,
+      "d": 113
+    },
+    "mne/utils/docs.py": {
+      "a": 12,
+      "d": 0
+    },
+    "mne/utils/numerics.py": {
+      "a": 3,
+      "d": 0
+    },
+    "mne/viz/tests/test_topomap.py": {
+      "a": 24,
+      "d": 1
+    },
+    "mne/viz/topomap.py": {
+      "a": 13,
+      "d": 1
+    }
+  }
+}