Merge branch 'master' of https://github.com/nel-lab/mesmerize-core

ethanbb · ethanbb · commit 3e75737d38a0 · 2025-09-02T21:52:49.000-04:00
diff --git a/mesmerize_core/VERSION b/mesmerize_core/VERSION
@@ -1 +1 @@
-0.4.0
+0.5.0
diff --git a/mesmerize_core/algorithms/cnmf.py b/mesmerize_core/algorithms/cnmf.py
@@ -86,7 +86,7 @@ def run_algo(batch_path, uuid, data_path: str = None):
         cnm = cnmf.CNMF(n_processes, params=cnmf_params, dview=dview)
 
         print("fitting images")
-        cnm = cnm.fit(images)
+        cnm.fit(images)
         #
         if "refit" in params.keys():
             if params["refit"] is True:
diff --git a/mesmerize_core/algorithms/cnmfe.py b/mesmerize_core/algorithms/cnmfe.py
@@ -83,7 +83,7 @@ def run_algo(batch_path, uuid, data_path: str = None):
         cnmfe_params_dict = CNMFParams(params_dict=params_dict)
         cnm = cnmf.CNMF(n_processes=n_processes, dview=dview, params=cnmfe_params_dict)
         print("Performing CNMFE")
-        cnm = cnm.fit(images)
+        cnm.fit(images)
         print("evaluating components")
         cnm.estimates.evaluate_components(images, cnm.params, dview=dview)
 
diff --git a/setup.py b/setup.py
@@ -12,6 +12,7 @@
     "psutil",
     "jupyterlab",
     "filelock",
+    "mslex",
 ]
 
 

Original file line number	Diff line number	Diff line change
`@@ -86,7 +86,7 @@ def run_algo(batch_path, uuid, data_path: str = None):`
`86`	`86`	`cnm = cnmf.CNMF(n_processes, params=cnmf_params, dview=dview)`
`87`	`87`
`88`	`88`	`print("fitting images")`
`89`		`- cnm = cnm.fit(images)`
	`89`	`+ cnm.fit(images)`
`90`	`90`	`#`
`91`	`91`	`if "refit" in params.keys():`
`92`	`92`	`if params["refit"] is True:`