Merge pull request #121 from JoseJVS/upstream-mpi-comm

Upstream mpi comm

Author: JoseJVS

python/hpc_benchmark/test_hpc_benchmark_hg/check.sh

@@ -0,0 +1 @@
+for i in $(seq 0 9); do diff raster_plot$i.png ../test_hpc_benchmark_p2p/raster_plot$i.png; done

python/hpc_benchmark/test_hpc_benchmark_hg/check2.sh

@@ -0,0 +1 @@
+more log_* | grep firi > tmp1.txt; more ../test_hpc_benchmark_p2p/log_* | grep firi > tmp2.txt; diff tmp1.txt tmp2.txt

python/hpc_benchmark/test_hpc_benchmark_wg/check.sh

@@ -0,0 +1 @@
+for i in $(seq 0 9); do diff raster_plot$i.png ../test_hpc_benchmark_p2p/raster_plot$i.png; done

python/hpc_benchmark/test_hpc_benchmark_wg/check2.sh

@@ -0,0 +1 @@
+more log_* | grep firi > tmp1.txt; more ../test_hpc_benchmark_p2p/log_* | grep firi > tmp2.txt; diff tmp1.txt tmp2.txt

python/test/logp3_connect.txt

@@ -8,6 +8,10 @@
 
  Homepage: https://github.com/nest/nest-gpu
 
+Calibrating ...
+Allocating auxiliary GPU memory...
+Sorting...
+Done
 ########################################
 Even to all
 {'index': 0, 'source': 0, 'target': 1, 'port': 0, 'syn_group': 0, 'delay': 1.0, 'weight': 100.0}
@@ -100,7 +104,3 @@ Even to 3,4,5,6
 {'index': 34, 'source': 6, 'target': 9, 'port': 0, 'syn_group': 0, 'delay': 69.0, 'weight': 6900.0}
 
 
-Calibrating ...
-Allocating auxiliary GPU memory...
-Sorting...
-Done

python/test/test_all.sh

@@ -2,7 +2,7 @@ pass_str[0]="TEST PASSED"
 pass_str[1]="TEST NOT PASSED"
 :>log.txt
 for fn in test_iaf_psc_exp_g.py test_iaf_psc_alpha.py test_fixed_total_number.py test_iaf_psc_exp.py test_spike_times.py test_aeif_cond_alpha.py test_aeif_cond_beta.py test_aeif_psc_alpha.py test_aeif_psc_delta.py test_aeif_psc_exp.py test_aeif_cond_alpha_multisynapse.py  test_aeif_cond_beta_multisynapse.py  test_aeif_psc_alpha_multisynapse.py  test_aeif_psc_exp_multisynapse.py test_stdp_list.py test_stdp.py test_syn_model.py test_brunel_list.py test_brunel_outdegree.py test_brunel_user_m1.py test_spike_detector.py; do
-    python3 $fn >> log.txt 2>err.txt
+    python3 -u $fn >> log.txt 2>err.txt
     res=$?
     cat err.txt >> log.txt
     rm -f err.txt
@@ -12,7 +12,7 @@ for fn in test_iaf_psc_exp_g.py test_iaf_psc_alpha.py test_fixed_total_number.py
     echo $fn : ${pass_str[$res]}
 done
 for fn in syn_group connect getarr setvar2 group_param; do
-    python3 test_$fn.py 2>&1 | grep -v dyl | grep -v 'Time:' | grep -v 'storage bytes:' | grep -v Indexing | grep -v 'Total number' > tmp
+    python3 -u test_$fn.py 2>&1 | grep -v dyl | grep -v 'Time:' | grep -v 'storage bytes:' | grep -v Indexing | grep -v 'Total number' | grep -v 'Time from' > tmp
     diff -qs tmp logp3_$fn.txt 2>&1 >> log.txt
     res=$?
     echo $fn : ${pass_str[$res]}    

python/test/test_stdp/cases/test_all.sh

@@ -1 +1 @@
-for i in $(seq 1 10); do python3 case$i.py | grep '^dw'; done
+for i in $(seq 1 10); do python3 -u case$i.py | grep '^dw'; done