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Release v0.10.9 (#361)
* Bump version: 0.10.8 → 0.10.9 * removed redundant CI * fixing conda * Update test-conda-build.yml * checking build with new .conda format * fixing conda * changing everything to rattler * removing noarch --------- Co-authored-by: violafanfani <viola.fanfani@gmail.com>
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‎.bumpversion.cfg‎

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[bumpversion]
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current_version = 0.10.8
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current_version = 0.10.9
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commit = True
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[bumpversion:file:setup.py]

‎.github/workflows/conda-publish-manual.yml‎

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name: conda release manual
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name: conda build manual release
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on:
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workflow_dispatch:
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branches:
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- master
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- devel
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jobs:
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build:
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name: Build package
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: [ubuntu-latest]
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python-version: ['3.10']
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include:
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- os: ubuntu-latest
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target-platform: linux-64
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- os: ubuntu-24.04-arm
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target-platform: linux-aarch64
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- os: macos-13
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target-platform: osx-64
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- os: macos-latest
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target-platform: osx-arm64
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steps:
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- uses: actions/checkout@v3
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- name: "Setup Conda"
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uses: s-weigand/setup-conda@v1
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with:
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update-conda: false
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python-version: ${{ matrix.python-version }}
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conda-channels: anaconda,conda-forge,bioconda
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- name: "Install Conda development packages"
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run: |
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conda install conda-build
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conda install -c anaconda anaconda-client
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- name: "Build and upload package"
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run: |
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mkdir conda-build
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conda build . --no-build-id --output-folder ./conda-build -c conda-forge
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conda install "urllib3<2"
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conda convert -p all ./conda-build/**/netzoopy*.bz2 --output-dir ./conda-build
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anaconda -t ${{ secrets.ANACONDA_TOKEN }} upload --force -u netzoo --no-progress ./conda-build/**/netzoopy*.bz2
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- uses: actions/checkout@v4
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- name: Build conda package
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uses: prefix-dev/rattler-build-action@v0.2.33
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with:
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# needs to be unique for each matrix entry
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recipe-path: recipe/
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artifact-name: package-${{ matrix.target-platform }}
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build-args: --target-platform ${{ matrix.target-platform }}${{ matrix.target-platform == 'linux-aarch64' && ' --no-test' || '' }}
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- name: Show built packages
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run: |
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ls -lh rattler-build/**/*.conda || true
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- name: Upload package to Anaconda
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run: |
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export ANACONDA_API_KEY=${{ secrets.ANACONDA_TOKEN }}
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rattler-build upload anaconda -o netzoo rattler-build/**/*.conda

‎.github/workflows/conda-publish.yml‎

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name: publish on release conda
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name: conda build release
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on:
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release:
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branches:
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- master
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jobs:
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build:
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name: Build package
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: [ubuntu-latest]
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python-version: ['3.10']
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include:
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- os: ubuntu-latest
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target-platform: linux-64
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- os: ubuntu-24.04-arm
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target-platform: linux-aarch64
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- os: macos-13
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target-platform: osx-64
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- os: macos-latest
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target-platform: osx-arm64
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steps:
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- uses: actions/checkout@v3
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- name: "Setup Conda"
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uses: s-weigand/setup-conda@v1
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with:
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update-conda: true
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python-version: ${{ matrix.python-version }}
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conda-channels: anaconda, conda-forge, bioconda
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- name: "Install Conda development packages"
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run: |
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conda install conda-build
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conda install -c anaconda anaconda-client
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- name: "Build and upload package"
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run: |
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mkdir conda-build
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conda build . --no-build-id --output-folder ./conda-build
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conda convert -p all ./conda-build/**/netzoopy*.bz2 --output-dir ./conda-build
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anaconda -t ${{ secrets.ANACONDA_TOKEN }} upload --force -u netzoo --no-progress ./conda-build/**/netzoopy*.bz2
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- uses: actions/checkout@v4
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- name: Build conda package
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uses: prefix-dev/rattler-build-action@v0.2.33
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with:
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# needs to be unique for each matrix entry
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recipe-path: recipe/
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artifact-name: package-${{ matrix.target-platform }}
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build-args: --target-platform ${{ matrix.target-platform }}${{ matrix.target-platform == 'linux-aarch64' && ' --no-test' || '' }}
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- name: Show built packages
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run: |
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ls -lh rattler-build/**/*.conda || true
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- name: Upload package to Anaconda
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run: |
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export ANACONDA_API_KEY=${{ secrets.ANACONDA_TOKEN }}
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rattler-build upload anaconda -o netzoo rattler-build/**/*.conda

‎.github/workflows/test-conda-build-39.yml‎

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‎.github/workflows/test-conda-build.yml‎

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name: test conda
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name: conda build test
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on:
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push:
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branches:
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- master
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- devel
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jobs:
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build:
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name: Build package
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runs-on: ${{ matrix.os }}
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strategy:
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matrix:
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os: [ubuntu-latest]
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python-version: ['3.10']
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include:
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- os: ubuntu-latest
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target-platform: linux-64
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- os: ubuntu-24.04-arm
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target-platform: linux-aarch64
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- os: macos-13
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target-platform: osx-64
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- os: macos-latest
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target-platform: osx-arm64
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steps:
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- uses: actions/checkout@v3
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- name: "Setup Conda"
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uses: s-weigand/setup-conda@v1
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with:
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update-conda: false
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python-version: ${{ matrix.python-version }}
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conda-channels: anaconda, conda-forge, bioconda
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- name: "Install Conda development packages"
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run: |
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conda install conda-build
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conda install -c anaconda anaconda-client
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- name: "Build and upload package"
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run: |
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mkdir conda-build
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conda build . --no-build-id --output-folder ./conda-build -c conda-forge
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conda install "urllib3<2"
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conda convert -p all ./conda-build/**/netzoopy*.bz2 --output-dir ./conda-build --dry-run
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- uses: actions/checkout@v4
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- name: Build conda package
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uses: prefix-dev/rattler-build-action@v0.2.33
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with:
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# needs to be unique for each matrix entry
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recipe-path: recipe/
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artifact-name: package-${{ matrix.target-platform }}
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build-args: --target-platform ${{ matrix.target-platform }}${{ matrix.target-platform == 'linux-aarch64' && ' --no-test' || '' }}
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- name: Show built packages
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run: |
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ls -lh rattler-build/**/*.conda || true
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‎.github/workflows/test-conda-manual-310.yml‎

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‎.github/workflows/test-conda-manual-38.yml‎

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‎.github/workflows/test-conda-manual-39.yml‎

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‎.github/workflows/test-conda-manual.yml‎

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‎.gitignore‎

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docs/_build/
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netZooPy/panda/io.py
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debug_bonobo.py
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!recipe/
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!recipe/recipe.yaml
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!recipe/test.py

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