Merge pull request #16 from nf-core/fix-dev

Pre-release

Author: christopher-hakkaart

CHANGELOG.md

@@ -3,23 +3,32 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## 1.0.2dev
-
 ## 1.0.1
 
+### Credits
+
+Special thanks to the following for their reviews and assistance:
+
+- [Matthias Hörtenhuber](https://github.com/mashehu)
+- [Chris Hakkaart](https://github.com/christopher-hakkaart)
+- [Maxime Garcia](https://github.com/maxulysse)
+- [Friederike Hanssen](https://github.com/FriederikeHanssen)
+
 ### Changed
 
+[#14](https://github.com/nf-core/demo/pull/14) - Update to template 3.0.2
 [#7](https://github.com/nf-core/demo/pull/7) - Updated Usage and README docs
 
 ### Fixed
 
+[#15](https://github.com/nf-core/demo/pull/15) - Add background to subway map
 [#7](https://github.com/nf-core/demo/pull/7) - Fixed full path for `test.config`
 
 ### Dependencies
 
 | Dependency | Old version | New version |
 | ---------- | ----------- | ----------- |
-| `multiqc`  | 1.21        | 1.23        |
+| `multiqc`  | 1.21        | 1.25.1      |
 
 ## [1.0.0](https://github.com/nf-core/demo/releases/tag/1.0.0) 2024-06-19
 

assets/multiqc_config.yml

@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/demo/tree/dev" target="_blank">nf-core/demo</a>
+  This report has been generated by the <a href="https://github.com/nf-core/demo/releases/tag/1.0.1" target="_blank">nf-core/demo</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/demo/dev/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/demo/1.0.1/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-demo-methods-description":
     order: -1000

nextflow.config

@@ -164,8 +164,8 @@ profiles {
 includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/nfcore_custom.config" : "/dev/null"
 
 // Load nf-core/demo custom profiles from different institutions.
-// TODO nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
-// includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/demo.config" : "/dev/null"
+// nf-core: Optionally, you can add a pipeline-specific nf-core config at https://github.com/nf-core/configs
+includeConfig !System.getenv('NXF_OFFLINE') && params.custom_config_base ? "${params.custom_config_base}/pipeline/demo.config" : "/dev/null"
 
 // Set default registry for Apptainer, Docker, Podman, Charliecloud and Singularity independent of -profile
 // Will not be used unless Apptainer / Docker / Podman / Charliecloud / Singularity are enabled
@@ -228,7 +228,7 @@ manifest {
     description     = """An nf-core demo pipeline"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=24.04.2'
-    version         = '1.0.2dev'
+    version         = '1.0.1'
     doi             = '10.5281/zenodo.12192442'
 }