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update snaps
1 parent 613fb9e commit 4a355a7

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lines changed

‎tests/default.nf.test.snap‎

Lines changed: 14 additions & 14 deletions
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@@ -98,10 +98,10 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
101+
"nf-test": "0.9.2",
102+
"nextflow": "24.10.4"
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},
104-
"timestamp": "2024-12-03T12:26:32.825018567"
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"timestamp": "2025-01-28T13:26:07.890871152"
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},
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"Params: default": {
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"content": [
@@ -367,10 +367,10 @@
367367
"multiqc/star_salmon/multiqc_report_data/multiqc_software_versions.txt",
368368
"multiqc/star_salmon/multiqc_report_data/multiqc_sources.txt",
369369
"multiqc/star_salmon/multiqc_report_data/multiqc_star.txt",
370+
"multiqc/star_salmon/multiqc_report_data/picard_MarkIlluminaAdapters_histogram.txt",
371+
"multiqc/star_salmon/multiqc_report_data/picard_MeanQualityByCycle_histogram.txt",
372+
"multiqc/star_salmon/multiqc_report_data/picard_QualityScoreDistribution_histogram.txt",
370373
"multiqc/star_salmon/multiqc_report_data/picard_deduplication.txt",
371-
"multiqc/star_salmon/multiqc_report_data/picard_histogram.txt",
372-
"multiqc/star_salmon/multiqc_report_data/picard_histogram_1.txt",
373-
"multiqc/star_salmon/multiqc_report_data/picard_histogram_2.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Counts.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Normalised.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_genomic_origin.txt",
@@ -1346,11 +1346,11 @@
13461346
"multiqc_cutadapt.txt:md5,583b7b9ba76b26162bb9610ed746454b",
13471347
"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
13481348
"multiqc_fastqc_fastqc_trimmed.txt:md5,54743154d0e8858980acffeb5b6f6a97",
1349-
"multiqc_featurecounts_biotype_plot.txt:md5,5d83930a8c0aebf5fff0a5d12857b42d",
1349+
"multiqc_featurecounts_biotype_plot.txt:md5,fb9db2fca737fbdcd1a921e683805d77",
13501350
"multiqc_samtools_idxstats.txt:md5,8b8f6cb092004918c18319a8cd64eb4c",
1351-
"picard_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1352-
"picard_histogram_1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1353-
"picard_histogram_2.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1351+
"picard_MarkIlluminaAdapters_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1352+
"picard_MeanQualityByCycle_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1353+
"picard_QualityScoreDistribution_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
13541354
"qualimap_gene_coverage_profile_Counts.txt:md5,d86b5743ba4486f5796327cbd2854882",
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"qualimap_gene_coverage_profile_Normalised.txt:md5,05618239e3183e8f312552676c4256b5",
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"qualimap_rnaseq_cov_hist.txt:md5,ea4b7cf07e5c7590ded5af29161db405",
@@ -1490,9 +1490,9 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
1493+
"nf-test": "0.9.2",
1494+
"nextflow": "24.10.4"
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},
1496-
"timestamp": "2024-12-03T12:39:04.406597796"
1496+
"timestamp": "2025-01-28T13:24:46.099038947"
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}
1498-
}
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}

‎tests/featurecounts_group_type.nf.test.snap‎

Lines changed: 13 additions & 13 deletions
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@@ -98,10 +98,10 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:26:42.742119846"
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"timestamp": "2025-01-28T13:38:47.824968389"
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},
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"Params: --featurecounts_group_type false": {
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"content": [
@@ -360,10 +360,10 @@
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"multiqc/star_salmon/multiqc_report_data/multiqc_software_versions.txt",
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"multiqc/star_salmon/multiqc_report_data/multiqc_sources.txt",
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"multiqc/star_salmon/multiqc_report_data/multiqc_star.txt",
363+
"multiqc/star_salmon/multiqc_report_data/picard_MarkIlluminaAdapters_histogram.txt",
364+
"multiqc/star_salmon/multiqc_report_data/picard_MeanQualityByCycle_histogram.txt",
365+
"multiqc/star_salmon/multiqc_report_data/picard_QualityScoreDistribution_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_deduplication.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram_1.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram_2.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Counts.txt",
368368
"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Normalised.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_genomic_origin.txt",
@@ -1313,9 +1313,9 @@
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"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
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"multiqc_fastqc_fastqc_trimmed.txt:md5,54743154d0e8858980acffeb5b6f6a97",
13151315
"multiqc_samtools_idxstats.txt:md5,8b8f6cb092004918c18319a8cd64eb4c",
1316-
"picard_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1317-
"picard_histogram_1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1318-
"picard_histogram_2.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1316+
"picard_MarkIlluminaAdapters_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1317+
"picard_MeanQualityByCycle_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1318+
"picard_QualityScoreDistribution_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
13191319
"qualimap_gene_coverage_profile_Counts.txt:md5,d86b5743ba4486f5796327cbd2854882",
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"qualimap_gene_coverage_profile_Normalised.txt:md5,05618239e3183e8f312552676c4256b5",
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"qualimap_rnaseq_cov_hist.txt:md5,ea4b7cf07e5c7590ded5af29161db405",
@@ -1440,9 +1440,9 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
1443+
"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:25:47.179044158"
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"timestamp": "2025-01-28T13:38:00.766111515"
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}
1448-
}
1448+
}

‎tests/hisat2.nf.test.snap‎

Lines changed: 14 additions & 14 deletions
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@@ -99,10 +99,10 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:39:53.585492305"
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"timestamp": "2025-01-28T13:46:14.476085587"
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},
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"Params: --aligner hisat2": {
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"content": [
@@ -834,10 +834,10 @@
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"multiqc/hisat2/multiqc_report_data/multiqc_samtools_stats.txt",
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"multiqc/hisat2/multiqc_report_data/multiqc_software_versions.txt",
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"multiqc/hisat2/multiqc_report_data/multiqc_sources.txt",
837+
"multiqc/hisat2/multiqc_report_data/picard_MarkIlluminaAdapters_histogram.txt",
838+
"multiqc/hisat2/multiqc_report_data/picard_MeanQualityByCycle_histogram.txt",
839+
"multiqc/hisat2/multiqc_report_data/picard_QualityScoreDistribution_histogram.txt",
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"multiqc/hisat2/multiqc_report_data/picard_deduplication.txt",
838-
"multiqc/hisat2/multiqc_report_data/picard_histogram.txt",
839-
"multiqc/hisat2/multiqc_report_data/picard_histogram_1.txt",
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"multiqc/hisat2/multiqc_report_data/picard_histogram_2.txt",
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"multiqc/hisat2/multiqc_report_data/qualimap_gene_coverage_profile_Counts.txt",
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"multiqc/hisat2/multiqc_report_data/qualimap_gene_coverage_profile_Normalised.txt",
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"multiqc/hisat2/multiqc_report_data/qualimap_genomic_origin.txt",
@@ -1293,11 +1293,11 @@
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"multiqc_cutadapt.txt:md5,583b7b9ba76b26162bb9610ed746454b",
12941294
"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
12951295
"multiqc_fastqc_fastqc_trimmed.txt:md5,54743154d0e8858980acffeb5b6f6a97",
1296-
"multiqc_featurecounts_biotype_plot.txt:md5,d784fc4b2dce860c8f88cc3e936e589e",
1296+
"multiqc_featurecounts_biotype_plot.txt:md5,6d251bec0231afccd0682e454a3b17bc",
12971297
"multiqc_samtools_idxstats.txt:md5,66a8e8aecb6233f5a3521151b1ce8d49",
1298-
"picard_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1299-
"picard_histogram_1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1300-
"picard_histogram_2.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1298+
"picard_MarkIlluminaAdapters_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1299+
"picard_MeanQualityByCycle_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1300+
"picard_QualityScoreDistribution_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
13011301
"qualimap_gene_coverage_profile_Counts.txt:md5,f3b9bb1902af4c7b5e04c0830ded2c02",
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"qualimap_gene_coverage_profile_Normalised.txt:md5,ebcedec8e5c959414a4e89ccae3fc07e",
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"qualimap_rnaseq_cov_hist.txt:md5,b78ff616f267f9b061b3297b767e88fb",
@@ -1340,9 +1340,9 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:38:50.917761241"
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"timestamp": "2025-01-28T13:45:28.520702162"
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}
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}
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}

‎tests/kallisto.nf.test.snap‎

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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:48:16.536464395"
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"timestamp": "2025-01-28T13:49:54.341502957"
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},
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"Params: --pseudo_aligner kallisto --skip_qc --skip_alignment - stub": {
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"content": [
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:49:02.306667165"
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"timestamp": "2025-01-28T13:50:34.753130451"
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}
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}
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}

‎tests/min_mapped_reads.nf.test.snap‎

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"multiqc/star_salmon/multiqc_report_data/multiqc_software_versions.txt",
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"multiqc/star_salmon/multiqc_report_data/multiqc_sources.txt",
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"multiqc/star_salmon/multiqc_report_data/multiqc_star.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_MarkIlluminaAdapters_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_MeanQualityByCycle_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_QualityScoreDistribution_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_deduplication.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram_1.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram_2.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Counts.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Normalised.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_genomic_origin.txt",
@@ -1077,11 +1077,11 @@
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"multiqc_fail_mapped_samples_table.txt:md5,5dd9b06f326b1a55d78878343af89927",
10781078
"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
10791079
"multiqc_fastqc_fastqc_trimmed.txt:md5,54743154d0e8858980acffeb5b6f6a97",
1080-
"multiqc_featurecounts_biotype_plot.txt:md5,d0e3792631b78e393de8e6bbbb49d476",
1080+
"multiqc_featurecounts_biotype_plot.txt:md5,7023aeba8868687d17107a265791f096",
10811081
"multiqc_samtools_idxstats.txt:md5,8b8f6cb092004918c18319a8cd64eb4c",
1082-
"picard_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"picard_histogram_1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1084-
"picard_histogram_2.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"picard_MarkIlluminaAdapters_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1083+
"picard_MeanQualityByCycle_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"picard_QualityScoreDistribution_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"qualimap_gene_coverage_profile_Counts.txt:md5,6d377444d29c3d4135980982ab1df2fb",
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"qualimap_gene_coverage_profile_Normalised.txt:md5,dc8b4f9fddc08e06668f9ee87faac008",
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"qualimap_rnaseq_cov_hist.txt:md5,a409821701f60811027daef4e7f3ebee",
@@ -1195,10 +1195,10 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:57:05.836924025"
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"timestamp": "2025-01-28T13:58:04.624400317"
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},
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"Params: --min_mapped_reads 90 - stub": {
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"content": [
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T17:57:59.273391037"
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"timestamp": "2025-01-28T13:58:55.550749008"
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}
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}
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}

‎tests/nofasta.nf.test.snap‎

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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2025-01-21T18:27:30.970398934"
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"timestamp": "2025-01-28T14:01:08.126903467"
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}
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}

‎tests/remove_ribo_rna.nf.test.snap‎

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"multiqc/star_salmon/multiqc_report_data/multiqc_sortmerna.txt",
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"multiqc/star_salmon/multiqc_report_data/multiqc_sources.txt",
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"multiqc/star_salmon/multiqc_report_data/multiqc_star.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_MarkIlluminaAdapters_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_MeanQualityByCycle_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_QualityScoreDistribution_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_deduplication.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram_1.txt",
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"multiqc/star_salmon/multiqc_report_data/picard_histogram_2.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Counts.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_gene_coverage_profile_Normalised.txt",
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"multiqc/star_salmon/multiqc_report_data/qualimap_genomic_origin.txt",
@@ -1262,11 +1262,11 @@
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"multiqc_fastqc_fastqc_raw.txt:md5,81c3c1a2575a1891a7f2a9637a0f2cc0",
12641264
"multiqc_fastqc_fastqc_trimmed.txt:md5,54743154d0e8858980acffeb5b6f6a97",
1265-
"multiqc_featurecounts_biotype_plot.txt:md5,f4de303d3277d862031df94b509527ba",
1265+
"multiqc_featurecounts_biotype_plot.txt:md5,4ae746bfab7f24c39085661271ab3c57",
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"multiqc_samtools_idxstats.txt:md5,58f19b28617037a2825f812d58d55e2e",
1267-
"picard_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1268-
"picard_histogram_1.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"picard_histogram_2.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"picard_MarkIlluminaAdapters_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
1268+
"picard_MeanQualityByCycle_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"picard_QualityScoreDistribution_histogram.txt:md5,d41d8cd98f00b204e9800998ecf8427e",
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"qualimap_gene_coverage_profile_Counts.txt:md5,286d47f67e1d034a88e122091ae30f3d",
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"qualimap_gene_coverage_profile_Normalised.txt:md5,3297068282f57506f40070b8bc6ad1b5",
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"qualimap_rnaseq_cov_hist.txt:md5,a523cfcb52fe8f2d5902d933568a790d",
@@ -1406,10 +1406,10 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T18:13:03.469655405"
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"timestamp": "2025-01-28T14:14:14.995102985"
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},
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"Params: --remove_ribo_rna - stub": {
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"content": [
@@ -1513,9 +1513,9 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T18:13:56.979730403"
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"timestamp": "2025-01-28T14:15:07.900489704"
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}
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}
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}

‎tests/salmon.nf.test.snap‎

Lines changed: 7 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -349,10 +349,10 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T19:45:33.529844191"
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"timestamp": "2025-01-28T14:18:40.084965809"
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},
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"Params: --pseudo_aligner salmon --skip_qc --skip_alignment - stub": {
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"content": [
@@ -433,9 +433,9 @@
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]
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],
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"meta": {
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"nf-test": "0.9.0",
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"nextflow": "24.10.2"
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"nf-test": "0.9.2",
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"nextflow": "24.10.4"
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},
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"timestamp": "2024-12-03T19:46:22.63337267"
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"timestamp": "2025-01-28T14:19:20.666237815"
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}
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}
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}

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