[automated] Update container configs

Author: nf-core-bot

conf/containers/containers_docker_arm64.config

@@ -34,16 +34,16 @@ process { withName: 'RSEQC_JUNCTIONANNOTATION' { container = 'community.wave.seq
 process { withName: 'UCSC_BEDCLIP' { container = 'community.wave.seqera.io/library/ucsc-bedclip:377--41de764ea1c26af4' } }
 process { withName: 'UCSC_BEDGRAPHTOBIGWIG' { container = 'community.wave.seqera.io/library/ucsc-bedgraphtobigwig:469--f66c00635e28f216' } }
 process { withName: 'CUSTOM_GETCHROMSIZES' { container = 'community.wave.seqera.io/library/htslib_samtools:1.21--6cb89bfd40cbaabf' } }
-process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.27--b0d1ffb40dfd9e97' } }
 process { withName: 'STAR_ALIGN_IGENOMES' { container = 'community.wave.seqera.io/library/star_samtools_gawk:bef5708b1c54889a' } }
+process { withName: 'MULTIQC' { container = 'community.wave.seqera.io/library/multiqc:1.27--b0d1ffb40dfd9e97' } }
 process { withName: 'GTF2BED' { container = 'community.wave.seqera.io/library/perl:5.26.2--e6570c5f08d3e12c' } }
 process { withName: 'SAMTOOLS_SORT' { container = 'community.wave.seqera.io/library/htslib_samtools:1.21--6cb89bfd40cbaabf' } }
 process { withName: 'SUBREAD_FEATURECOUNTS' { container = 'community.wave.seqera.io/library/subread:2.0.6--1968a7457b0ed34e' } }
 process { withName: 'SALMON_INDEX' { container = 'community.wave.seqera.io/library/salmon:1.10.3--fcd0755dd8abb423' } }
 process { withName: 'BRACKEN_BRACKEN' { container = 'community.wave.seqera.io/library/bracken:2.9--3d5af74ed6966fc1' } }
 process { withName: 'UMITOOLS_EXTRACT' { container = 'community.wave.seqera.io/library/umi_tools:1.1.5--a4e9770134f31e60' } }
-process { withName: 'HISAT2_ALIGN' { container = 'community.wave.seqera.io/library/hisat2_samtools:9ef5e68250d2aa60' } }
 process { withName: 'KALLISTO_INDEX' { container = 'community.wave.seqera.io/library/kallisto:0.51.1--b63691b6841c7a52' } }
+process { withName: 'HISAT2_ALIGN' { container = 'community.wave.seqera.io/library/hisat2_samtools:9ef5e68250d2aa60' } }
 process { withName: 'UMICOLLAPSE' { container = 'community.wave.seqera.io/library/umicollapse:1.1.0--74864b350c72f3a0' } }
 process { withName: 'BBMAP_BBSPLIT' { container = 'community.wave.seqera.io/library/bbmap:39.10--168578230ff6490a' } }
 process { withName: 'RSEQC_TIN' { container = 'community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
@@ -55,8 +55,8 @@ process { withName: 'STRINGTIE_STRINGTIE' { container = 'community.wave.seqera.i
 process { withName: 'HISAT2_EXTRACTSPLICESITES' { container = 'community.wave.seqera.io/library/hisat2:2.2.1--df34d2bb25ac6de5' } }
 process { withName: 'KALLISTO_QUANT' { container = 'community.wave.seqera.io/library/kallisto:0.51.1--b63691b6841c7a52' } }
 process { withName: 'SAMTOOLS_IDXSTATS' { container = 'community.wave.seqera.io/library/htslib_samtools:1.21--6cb89bfd40cbaabf' } }
-process { withName: 'STAR_GENOMEGENERATE' { container = 'community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
 process { withName: 'STAR_GENOMEGENERATE_IGENOMES' { container = 'community.wave.seqera.io/library/star_samtools_gawk:342c22574b6bb80b' } }
+process { withName: 'STAR_GENOMEGENERATE' { container = 'community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
 process { withName: 'SALMON_QUANT' { container = 'community.wave.seqera.io/library/salmon:1.10.3--fcd0755dd8abb423' } }
 process { withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' { container = 'community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
 process { withName: 'FQ_LINT' { container = 'community.wave.seqera.io/library/fq:0.12.0--45ea0ea1c4d20daa' } }

conf/containers/containers_singularity_amd64.config

@@ -57,8 +57,8 @@ process { withName: 'KALLISTO_QUANT' { container = 'docker://community.wave.seqe
 process { withName: 'SAMTOOLS_IDXSTATS' { container = 'docker://community.wave.seqera.io/library/htslib_samtools:1.21--6cb89bfd40cbaabf' } }
 process { withName: 'STAR_GENOMEGENERATE_IGENOMES' { container = 'docker://community.wave.seqera.io/library/star_samtools_gawk:bef5708b1c54889a' } }
 process { withName: 'STAR_GENOMEGENERATE' { container = 'docker://community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
-process { withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' { container = 'docker://community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
 process { withName: 'SALMON_QUANT' { container = 'docker://community.wave.seqera.io/library/salmon:1.10.3--fcd0755dd8abb423' } }
+process { withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' { container = 'docker://community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
 process { withName: 'FQ_LINT' { container = 'docker://community.wave.seqera.io/library/fq:0.12.0--45ea0ea1c4d20daa' } }
 process { withName: 'MULTIQC_CUSTOM_BIOTYPE' { container = 'docker://community.wave.seqera.io/library/python:3.9.5--0ee01a3faebf676a' } }
 process { withName: 'RSEM_CALCULATEEXPRESSION' { container = 'docker://community.wave.seqera.io/library/rsem_star:5acb4e8c03239c32' } }

conf/containers/containers_singularity_arm64.config

@@ -34,16 +34,16 @@ process { withName: 'RSEQC_JUNCTIONANNOTATION' { container = 'docker://community
 process { withName: 'UCSC_BEDCLIP' { container = 'docker://community.wave.seqera.io/library/ucsc-bedclip:377--41de764ea1c26af4' } }
 process { withName: 'UCSC_BEDGRAPHTOBIGWIG' { container = 'docker://community.wave.seqera.io/library/ucsc-bedgraphtobigwig:469--f66c00635e28f216' } }
 process { withName: 'CUSTOM_GETCHROMSIZES' { container = 'docker://community.wave.seqera.io/library/htslib_samtools:1.21--6cb89bfd40cbaabf' } }
-process { withName: 'MULTIQC' { container = 'docker://community.wave.seqera.io/library/multiqc:1.27--b0d1ffb40dfd9e97' } }
 process { withName: 'STAR_ALIGN_IGENOMES' { container = 'docker://community.wave.seqera.io/library/star_samtools_gawk:bef5708b1c54889a' } }
+process { withName: 'MULTIQC' { container = 'docker://community.wave.seqera.io/library/multiqc:1.27--b0d1ffb40dfd9e97' } }
 process { withName: 'GTF2BED' { container = 'docker://community.wave.seqera.io/library/perl:5.26.2--e6570c5f08d3e12c' } }
 process { withName: 'SAMTOOLS_SORT' { container = 'docker://community.wave.seqera.io/library/htslib_samtools:1.21--6cb89bfd40cbaabf' } }
 process { withName: 'SUBREAD_FEATURECOUNTS' { container = 'docker://community.wave.seqera.io/library/subread:2.0.6--1968a7457b0ed34e' } }
 process { withName: 'SALMON_INDEX' { container = 'docker://community.wave.seqera.io/library/salmon:1.10.3--fcd0755dd8abb423' } }
 process { withName: 'BRACKEN_BRACKEN' { container = 'docker://community.wave.seqera.io/library/bracken:2.9--3d5af74ed6966fc1' } }
 process { withName: 'UMITOOLS_EXTRACT' { container = 'docker://community.wave.seqera.io/library/umi_tools:1.1.5--a4e9770134f31e60' } }
-process { withName: 'HISAT2_ALIGN' { container = 'docker://community.wave.seqera.io/library/hisat2_samtools:9ef5e68250d2aa60' } }
 process { withName: 'KALLISTO_INDEX' { container = 'docker://community.wave.seqera.io/library/kallisto:0.51.1--b63691b6841c7a52' } }
+process { withName: 'HISAT2_ALIGN' { container = 'docker://community.wave.seqera.io/library/hisat2_samtools:9ef5e68250d2aa60' } }
 process { withName: 'UMICOLLAPSE' { container = 'docker://community.wave.seqera.io/library/umicollapse:1.1.0--74864b350c72f3a0' } }
 process { withName: 'BBMAP_BBSPLIT' { container = 'docker://community.wave.seqera.io/library/bbmap:39.10--168578230ff6490a' } }
 process { withName: 'RSEQC_TIN' { container = 'docker://community.wave.seqera.io/library/rseqc_r-base:2c6374f25c7b060e' } }
@@ -55,8 +55,8 @@ process { withName: 'STRINGTIE_STRINGTIE' { container = 'docker://community.wave
 process { withName: 'HISAT2_EXTRACTSPLICESITES' { container = 'docker://community.wave.seqera.io/library/hisat2:2.2.1--df34d2bb25ac6de5' } }
 process { withName: 'KALLISTO_QUANT' { container = 'docker://community.wave.seqera.io/library/kallisto:0.51.1--b63691b6841c7a52' } }
 process { withName: 'SAMTOOLS_IDXSTATS' { container = 'docker://community.wave.seqera.io/library/htslib_samtools:1.21--6cb89bfd40cbaabf' } }
-process { withName: 'STAR_GENOMEGENERATE' { container = 'docker://community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
 process { withName: 'STAR_GENOMEGENERATE_IGENOMES' { container = 'docker://community.wave.seqera.io/library/star_samtools_gawk:342c22574b6bb80b' } }
+process { withName: 'STAR_GENOMEGENERATE' { container = 'docker://community.wave.seqera.io/library/htslib_samtools_star_gawk:311d422a50e6d829' } }
 process { withName: 'SALMON_QUANT' { container = 'docker://community.wave.seqera.io/library/salmon:1.10.3--fcd0755dd8abb423' } }
 process { withName: 'PREPROCESS_TRANSCRIPTS_FASTA_GENCODE' { container = 'docker://community.wave.seqera.io/library/sed:4.7--c9d1b71422302845' } }
 process { withName: 'FQ_LINT' { container = 'docker://community.wave.seqera.io/library/fq:0.12.0--45ea0ea1c4d20daa' } }