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Merge pull request #1563 from nf-core/pre_3.19.0_bumps
Version bumps ahead of 3.19.0 release
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‎CHANGELOG.md‎

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The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
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and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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# 3.19.0dev - xxxx-xx-xx
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# 3.19.0 - 2025-06-06
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### Credits
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- [PR #1556](https://github.com/nf-core/rnaseq/pull/1556) - Update index docs to remove references to 'indexing only mode'
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- [PR #1558](https://github.com/nf-core/rnaseq/pull/1558) - Remove patches and bump modules for ARM compat
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- [PR #1560](https://github.com/nf-core/rnaseq/pull/1560) - General modules update, include updating subworkflows for stats fixes
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- [PR #1563](https://github.com/nf-core/rnaseq/pull/1563) - Version bumps ahead of 3.19.0 release
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# 3.18.0 - 2024-12-19
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‎nextflow.config‎

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name = 'nf-core/rnaseq'
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author = """Harshil Patel, Phil Ewels, Rickard Hammarén""" // The author field is deprecated from Nextflow version 24.10.0, use contributors instead
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contributors = [
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// TODO nf-core: Update the field with the details of the contributors to your pipeline. New with Nextflow version 24.10.0
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[
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name: 'Harshil Patel',
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affiliation: '',
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affiliation: 'Seqera',
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email: '',
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github: '',
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contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
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github: '@drpatelh',
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contribution: ['author'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: '0000-0003-2707-7940'
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],
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[
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name: 'Jonathan Manning',
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affiliation: 'Seqera',
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email: '',
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github: '@pinin4fjords',
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contribution: ['maintainer', 'contributor'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: '0000-0002-3483-8456'
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],
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[
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name: 'Maxime Garcia',
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affiliation: 'Seqera',
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email: '',
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github: '@maxulysse',
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contribution: ['contributor', 'maintainer'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: ''
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],
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name: 'Phil Ewels',
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affiliation: '',
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affiliation: 'Seqera',
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email: '',
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github: '',
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contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
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github: '@ewels',
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contribution: ['author'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: ''
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],
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[
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name: 'Alexander Peltzer',
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affiliation: 'Boehringer Ingelheim',
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email: '',
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github: '@apeltzer',
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contribution: ['contributor'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: '0000-0002-6503-2180'
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],
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[
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name: 'Rickard Hammarén',
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affiliation: '',
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affiliation: 'Scilifelab Data Centre',
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email: '',
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github: '@Hammarn',
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contribution: ['author'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: '0000-0001-9017-591X'
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],
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[
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name: 'Olga Botvinnik',
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affiliation: 'Seanome',
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email: '',
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github: '@olgabot',
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contribution: ['contributor'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: '0000-0003-4412-7970'
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],
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[
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name: 'Adam Talbot',
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affiliation: 'Seqera',
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email: '',
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github: '',
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contribution: [], // List of contribution types ('author', 'maintainer' or 'contributor')
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github: '@adamrtalbot',
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contribution: ['contributor'], // List of contribution types ('author', 'maintainer' or 'contributor')
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orcid: ''
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],
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]
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mainScript = 'main.nf'
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defaultBranch = 'master'
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nextflowVersion = '!>=24.04.2'
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version = '3.19.0dev'
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version = '3.19.0'
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doi = 'https://doi.org/10.5281/zenodo.1400710'
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}
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‎ro-crate-metadata.json‎

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‎tests/default.nf.test.snap‎

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‎tests/featurecounts_group_type.nf.test.snap‎

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‎tests/hisat2.nf.test.snap‎

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‎tests/kallisto.nf.test.snap‎

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‎tests/min_mapped_reads.nf.test.snap‎

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‎tests/nofasta.nf.test.snap‎

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‎tests/remove_ribo_rna.nf.test.snap‎

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