@@ -25,6 +25,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
2525
2626### Enhancements & fixes
2727
28+ - [ PR #1180 ] ( https://github.com/nf-core/rnaseq/pull/1180 ) - Bump pipeline version to 3.15.0dev
2829- [ PR #1186 ] ( https://github.com/nf-core/rnaseq/pull/1186 ) - Properly update qualimap/rnaseq module (ie not patch)
2930- [ PR #1197 ] ( https://github.com/nf-core/rnaseq/pull/1197 ) - Delete lib directory and replace with utils\_\* subworkflows
3031- [ PR #1199 ] ( https://github.com/nf-core/rnaseq/pull/1199 ) - Replace modules.config with more modular config files per module/subworkflow/workflow
@@ -75,7 +76,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
7576- [ PR #1272 ] ( https://github.com/nf-core/rnaseq/pull/1272 ) - Simple pipeline level nf-tests
7677- [ PR #1274 ] ( https://github.com/nf-core/rnaseq/pull/1274 ) - Update bam_markduplicates_picard subworkflow
7778- [ PR #1278 ] ( https://github.com/nf-core/rnaseq/pull/1278 ) - Delocalise pseudo quant workflow
78- - [ PR #1279 ] ( https://github.com/nf-core/rnaseq/pull/1279 ) - Add psueudoaligner pipeline level tests to test suite
79+ - [ PR #1279 ] ( https://github.com/nf-core/rnaseq/pull/1279 ) - Add pseudoaligner pipeline level tests to test suite
7980- [ PR #1280 ] ( https://github.com/nf-core/rnaseq/pull/1280 ) - Reorganise pipeline level tests into flat directory structure
8081- [ PR #1282 ] ( https://github.com/nf-core/rnaseq/pull/1282 ) - Fix CHANGELOG error
8182- [ PR #1283 ] ( https://github.com/nf-core/rnaseq/pull/1283 ) - Add output files to nf-test snapshot
@@ -104,14 +105,14 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
104105- [ PR #1331 ] ( https://github.com/nf-core/rnaseq/pull/1331 ) - Adding stubs for local modules
105106- [ PR #1334 ] ( https://github.com/nf-core/rnaseq/pull/1334 ) - Update all nf-core/modules and subworkflows with stubs
106107- [ PR #1335 ] ( https://github.com/nf-core/rnaseq/pull/1335 ) - Adding stubs at all levels
107- - [ PR #1336 ] ( https://github.com/nf-core/rnaseq/pull/1334 ) - Use nf-core/setup-nf-test to install nf-test from cache during CI/CD
108+ - [ PR #1336 ] ( https://github.com/nf-core/rnaseq/pull/1336 ) - Use nf-core/setup-nf-test to install nf-test from cache during CI/CD
108109- [ PR #1340 ] ( https://github.com/nf-core/rnaseq/pull/1340 ) - Remove out-of-date Azure specific guidance
109110- [ PR #1341 ] ( https://github.com/nf-core/rnaseq/pull/1341 ) - Add rename in the MultiQC report for samples without techreps
110111- [ PR #1342 ] ( https://github.com/nf-core/rnaseq/pull/1342 ) - Factor out preprocessing
111112- [ PR #1345 ] ( https://github.com/nf-core/rnaseq/pull/1345 ) - Fix preprocessing call
112113- [ PR #1350 ] ( https://github.com/nf-core/rnaseq/pull/1350 ) - Reduce resource usage for sort process in bedtools/genomecov
113- - [ PR #1353 ] ( https://github.com/nf-core/rnaseq/pull/1353 ) - Correct conditional for salmon indexing in preprocessing workflow
114114- [ PR #1352 ] ( https://github.com/nf-core/rnaseq/pull/1352 ) - Assorted fixes to MultiQC usage
115+ - [ PR #1353 ] ( https://github.com/nf-core/rnaseq/pull/1353 ) - Correct conditional for salmon indexing in preprocessing workflow
115116- [ PR #1355 ] ( https://github.com/nf-core/rnaseq/pull/1355 ) - Make all curves on subway map better looking, and all lines now have the same width
116117- [ PR #1357 ] ( https://github.com/nf-core/rnaseq/pull/1357 ) - Fix anchor issue in multiqc
117118- [ PR #1358 ] ( https://github.com/nf-core/rnaseq/pull/1358 ) - Update test profiles to restore a static URI for megatests
@@ -123,6 +124,8 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements
123124- [ PR #1363 ] ( https://github.com/nf-core/rnaseq/pull/1363 ) - Update dupradar script
124125- [ PR #1366 ] ( https://github.com/nf-core/rnaseq/pull/1366 ) - Clarify docs on different tximport count files
125126- [ PR #1367 ] ( https://github.com/nf-core/rnaseq/pull/1367 ) - Clarify design formula and blind dispersion estimation
127+ - [ PR #1370 ] ( https://github.com/nf-core/rnaseq/pull/1370 ) - Bump versions for 3.15.0
128+ - [ PR #1371 ] ( https://github.com/nf-core/rnaseq/pull/1371 ) - Apply Maxime's CHANGELOG edits
126129
127130### Parameters
128131
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