diff --git a/assets/schema_input.json b/assets/schema_input.json index 980a829ea..dc330e9cd 100644 --- a/assets/schema_input.json +++ b/assets/schema_input.json @@ -8,7 +8,7 @@ "type": "object", "properties": { "sample": { - "type": "string", + "type": ["string", "integer"], "pattern": "^\\S+$", "errorMessage": "Sample name must be provided and cannot contain spaces", "meta": ["id"] diff --git a/workflows/rnaseq/assets/multiqc/multiqc_config.yml b/workflows/rnaseq/assets/multiqc/multiqc_config.yml index a60c89347..908ef5cca 100644 --- a/workflows/rnaseq/assets/multiqc/multiqc_config.yml +++ b/workflows/rnaseq/assets/multiqc/multiqc_config.yml @@ -210,6 +210,11 @@ sp: picard/wgs_metrics: skip: true + + +fn_ignore_files: + - "*umi_dedup.transcriptome.sorted.log" + # See https://github.com/ewels/MultiQC_TestData/blob/master/data/custom_content/with_config/table_headerconfig/multiqc_config.yaml custom_data: fail_trimmed_samples: