diff --git a/modules/local/celda/Dockerfile b/modules/local/celda/Dockerfile index 1cd3949f..bd4c5071 100644 --- a/modules/local/celda/Dockerfile +++ b/modules/local/celda/Dockerfile @@ -1,3 +1,3 @@ FROM community.wave.seqera.io/library/bioconductor-celda_bioconductor-singlecellexperiment_r-hdf5r_r-pak:eae54a7b6809057d -RUN R -e "pak::pak('scverse/anndataR')" +RUN R -e "pak::pak('scverse/anndataR@0.1.0')" diff --git a/modules/local/doublet_detection/scds/Dockerfile b/modules/local/doublet_detection/scds/Dockerfile index f7c2a006..9a4e2b58 100644 --- a/modules/local/doublet_detection/scds/Dockerfile +++ b/modules/local/doublet_detection/scds/Dockerfile @@ -1,3 +1,3 @@ FROM community.wave.seqera.io/library/bioconductor-scds_r-hdf5r_r-pak_r-xgboost:b848e7e3a7f5666d -RUN R -e "pak::pak('scverse/anndataR')" +RUN R -e "pak::pak('scverse/anndataR@0.1.0')" diff --git a/modules/local/seurat/Dockerfile b/modules/local/seurat/Dockerfile index 73598d18..236a098d 100644 --- a/modules/local/seurat/Dockerfile +++ b/modules/local/seurat/Dockerfile @@ -1,3 +1,3 @@ FROM community.wave.seqera.io/library/bioconductor-glmgampoi_bioconductor-singlecellexperiment_r-hdf5r_r-pak_r-seurat:237343f98a0c9c66 -RUN R -e "pak::pak('scverse/anndataR')" +RUN R -e "pak::pak('scverse/anndataR@0.1.0')" diff --git a/modules/local/soupx/Dockerfile b/modules/local/soupx/Dockerfile index 9042b4f9..d446d78c 100644 --- a/modules/local/soupx/Dockerfile +++ b/modules/local/soupx/Dockerfile @@ -1,3 +1,3 @@ FROM community.wave.seqera.io/library/r-hdf5r_r-pak_r-seurat_r-soupx:2624b52e87cb1f73 -RUN R -e "pak::pak('scverse/anndataR')" +RUN R -e "pak::pak('scverse/anndataR@0.1.0')" diff --git a/tests/default.nf.test.snap b/tests/default.nf.test.snap index f5f8d920..694b70ec 100644 --- a/tests/default.nf.test.snap +++ b/tests/default.nf.test.snap @@ -36,7 +36,7 @@ }, "CELDA_DECONTX": { "r": "4.4.3", - "anndataR": "0.99.0", + "anndataR": "0.1.0", "celda": "1.22.0" }, "CELLTYPES_CELLTYPIST": { @@ -297,4 +297,4 @@ }, "timestamp": "2025-06-07T14:25:32.300412343" } -} \ No newline at end of file +} diff --git a/tests/main_pipeline_build.nf.test.snap b/tests/main_pipeline_build.nf.test.snap index 22d05757..e989d962 100644 --- a/tests/main_pipeline_build.nf.test.snap +++ b/tests/main_pipeline_build.nf.test.snap @@ -36,7 +36,7 @@ }, "CELDA_DECONTX": { "r": "4.4.3", - "anndataR": "0.99.0", + "anndataR": "0.1.0", "celda": "1.22.0" }, "CELLTYPES_CELLTYPIST": { @@ -149,7 +149,7 @@ "SEURAT_INTEGRATION": { "R": "4.4.3", "Seurat": "5.3.0", - "anndataR": "0.99.0" + "anndataR": "0.1.0" }, "UMAP": { "pandas": "2.2.3", @@ -323,4 +323,4 @@ }, "timestamp": "2025-06-07T15:32:33.744749359" } -} \ No newline at end of file +} diff --git a/tests/main_pipeline_extend.nf.test.snap b/tests/main_pipeline_extend.nf.test.snap index 0816c60a..cbf52529 100644 --- a/tests/main_pipeline_extend.nf.test.snap +++ b/tests/main_pipeline_extend.nf.test.snap @@ -33,7 +33,7 @@ }, "CELDA_DECONTX": { "r": "4.4.3", - "anndataR": "0.99.0", + "anndataR": "0.1.0", "celda": "1.22.0" }, "CELLTYPES_CELLTYPIST": { @@ -211,4 +211,4 @@ }, "timestamp": "2025-06-07T15:14:19.272534201" } -} \ No newline at end of file +} diff --git a/tests/main_pipeline_qc.nf.test.snap b/tests/main_pipeline_qc.nf.test.snap index a826ff28..6768b440 100644 --- a/tests/main_pipeline_qc.nf.test.snap +++ b/tests/main_pipeline_qc.nf.test.snap @@ -12,7 +12,7 @@ }, "CELDA_DECONTX": { "r": "4.4.3", - "anndataR": "0.99.0", + "anndataR": "0.1.0", "celda": "1.22.0" }, "CELLTYPES_CELLTYPIST": { @@ -118,4 +118,4 @@ }, "timestamp": "2025-06-07T20:00:51.395546637" } -} \ No newline at end of file +} diff --git a/tests/main_pipeline_reference_mapping.nf.test.snap b/tests/main_pipeline_reference_mapping.nf.test.snap index cddb02e8..2e332ecb 100644 --- a/tests/main_pipeline_reference_mapping.nf.test.snap +++ b/tests/main_pipeline_reference_mapping.nf.test.snap @@ -29,7 +29,7 @@ }, "CELDA_DECONTX": { "r": "4.4.3", - "anndataR": "0.99.0", + "anndataR": "0.1.0", "celda": "1.22.0" }, "CELLTYPES_CELLTYPIST": { @@ -211,4 +211,4 @@ }, "timestamp": "2025-06-07T20:00:48.182866511" } -} \ No newline at end of file +}