diff --git a/pydra/tasks/mrtrix3/manual/mrcalc.py b/pydra/tasks/mrtrix3/manual/mrcalc.py index 8d4a166..51b4cac 100644 --- a/pydra/tasks/mrtrix3/manual/mrcalc.py +++ b/pydra/tasks/mrtrix3/manual/mrcalc.py @@ -62,7 +62,7 @@ class MrCalcOp(Enum): def operations_formatter( - operations: ty.List[ty.Tuple[ty.List[ty.Union[ImageIn, float]], MrCalcOp]] + operations: ty.List[ty.Tuple[ty.List[ty.Union[ImageIn, float]], MrCalcOp]], ): return " ".join( [ @@ -272,7 +272,7 @@ class MrCalc(shell.Task["MrCalc.Outputs"]): default=None, ) - config: MultiInputObj[tuple[str, str]] = shell.arg( + config: MultiInputObj[tuple[str, str]] | None = shell.arg( argstr="-config", help="""temporarily set the value of an MRtrix config file entry.""", ) diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py index 8c866c9..3f77f2b 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_3dautomask.py @@ -154,7 +154,7 @@ class Dwi2Mask_3dautomask(shell.Task["Dwi2Mask_3dautomask.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py index 1f7b26c..12d2d5a 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_ants.py @@ -104,7 +104,7 @@ class Dwi2Mask_Ants(shell.Task["Dwi2Mask_Ants.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py index 5604a9d..3d4cf40 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_b02template.py @@ -127,7 +127,7 @@ class Dwi2Mask_B02template(shell.Task["Dwi2Mask_B02template.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py index cb8dea9..a1ef67d 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_consensus.py @@ -112,7 +112,7 @@ class Dwi2Mask_Consensus(shell.Task["Dwi2Mask_Consensus.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py index 4600f27..34e237b 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_fslbet.py @@ -124,7 +124,7 @@ class Dwi2Mask_Fslbet(shell.Task["Dwi2Mask_Fslbet.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py index bf5e56b..724ed65 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_hdbet.py @@ -104,7 +104,7 @@ class Dwi2Mask_Hdbet(shell.Task["Dwi2Mask_Hdbet.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py index e63c30b..bf7a11f 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_legacy.py @@ -97,7 +97,7 @@ class Dwi2Mask_Legacy(shell.Task["Dwi2Mask_Legacy.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py index c60ea35..d9dad56 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mean.py @@ -107,7 +107,7 @@ class Dwi2Mask_Mean(shell.Task["Dwi2Mask_Mean.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py index 5c32f77..69c6e3b 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_mtnorm.py @@ -116,7 +116,7 @@ class Dwi2Mask_Mtnorm(shell.Task["Dwi2Mask_Mtnorm.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py index f8af615..1d7d409 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_synthstrip.py @@ -119,7 +119,7 @@ class Dwi2Mask_Synthstrip(shell.Task["Dwi2Mask_Synthstrip.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py b/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py index 5bd09d7..a5c30e7 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2mask_trace.py @@ -117,7 +117,7 @@ class Dwi2Mask_Trace(shell.Task["Dwi2Mask_Trace.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py index a019108..2ace87a 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_dhollander.py @@ -147,7 +147,7 @@ class Dwi2Response_Dhollander(shell.Task["Dwi2Response_Dhollander.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py index 3999b05..c0a6de2 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_fa.py @@ -129,7 +129,7 @@ class Dwi2Response_Fa(shell.Task["Dwi2Response_Fa.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py index f5cb514..f553ed4 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_manual.py @@ -122,7 +122,7 @@ class Dwi2Response_Manual(shell.Task["Dwi2Response_Manual.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py index 2fbbab9..dc1ef0a 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_msmt_5tt.py @@ -145,7 +145,7 @@ class Dwi2Response_Msmt_5tt(shell.Task["Dwi2Response_Msmt_5tt.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py index 775dee3..99fd44e 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_tax.py @@ -129,7 +129,7 @@ class Dwi2Response_Tax(shell.Task["Dwi2Response_Tax.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py b/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py index 8829ff5..b95046b 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py +++ b/pydra/tasks/mrtrix3/v3_1/dwi2response_tournier.py @@ -134,7 +134,7 @@ class Dwi2Response_Tournier(shell.Task["Dwi2Response_Tournier.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py index c58107b..28887ac 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_ants.py @@ -119,7 +119,7 @@ class DwiBiascorrect_Ants(shell.Task["DwiBiascorrect_Ants.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py index 7742e97..2114ca8 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_fsl.py @@ -106,7 +106,7 @@ class DwiBiascorrect_Fsl(shell.Task["DwiBiascorrect_Fsl.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py index db10345..558402b 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiascorrect_mtnorm.py @@ -113,7 +113,7 @@ class DwiBiascorrect_Mtnorm(shell.Task["DwiBiascorrect_Mtnorm.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py b/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py index e17be76..fec9cef 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py +++ b/pydra/tasks/mrtrix3/v3_1/dwibiasnormmask.py @@ -143,7 +143,7 @@ class DwiBiasnormmask(shell.Task["DwiBiasnormmask.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwicat.py b/pydra/tasks/mrtrix3/v3_1/dwicat.py index 11a2ca2..b4eb6e3 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwicat.py +++ b/pydra/tasks/mrtrix3/v3_1/dwicat.py @@ -87,7 +87,7 @@ class DwiCat(shell.Task["DwiCat.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py b/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py index bcc2a8e..aaf98ad 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py +++ b/pydra/tasks/mrtrix3/v3_1/dwifslpreproc.py @@ -192,7 +192,7 @@ class DwiFslpreproc(shell.Task["DwiFslpreproc.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py b/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py index 7213cab..da889ac 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py +++ b/pydra/tasks/mrtrix3/v3_1/dwigradcheck.py @@ -105,7 +105,7 @@ class DwiGradcheck(shell.Task["DwiGradcheck.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py b/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py index a8016d6..ec91be5 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py +++ b/pydra/tasks/mrtrix3/v3_1/dwinormalise_group.py @@ -92,7 +92,7 @@ class DwiNormalise_Group(shell.Task["DwiNormalise_Group.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py b/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py index fadd9d3..16aa2fa 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py +++ b/pydra/tasks/mrtrix3/v3_1/dwinormalise_manual.py @@ -102,7 +102,7 @@ class DwiNormalise_Manual(shell.Task["DwiNormalise_Manual.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py b/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py index cfac264..c5cbbf2 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py +++ b/pydra/tasks/mrtrix3/v3_1/dwinormalise_mtnorm.py @@ -120,7 +120,7 @@ class DwiNormalise_Mtnorm(shell.Task["DwiNormalise_Mtnorm.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/dwishellmath.py b/pydra/tasks/mrtrix3/v3_1/dwishellmath.py index 9688daa..18dbe5a 100644 --- a/pydra/tasks/mrtrix3/v3_1/dwishellmath.py +++ b/pydra/tasks/mrtrix3/v3_1/dwishellmath.py @@ -116,7 +116,7 @@ class DwiShellmath(shell.Task["DwiShellmath.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py index 96fa986..dbad818 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_deep_atropos.py @@ -101,7 +101,7 @@ class FivettGen_Deep_atropos(shell.Task["FivettGen_Deep_atropos.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py index b254e85..3dd6fcc 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_freesurfer.py @@ -104,7 +104,7 @@ class FivettGen_Freesurfer(shell.Task["FivettGen_Freesurfer.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py index b4d77fc..8f4f878 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_fsl.py @@ -122,7 +122,7 @@ class FivettGen_Fsl(shell.Task["FivettGen_Fsl.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py index 24a46dd..f6804b9 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_gif.py @@ -99,7 +99,7 @@ class FivettGen_Gif(shell.Task["FivettGen_Gif.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py b/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py index f4630c9..f7dac63 100644 --- a/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py +++ b/pydra/tasks/mrtrix3/v3_1/fivettgen_hsvs.py @@ -117,7 +117,7 @@ class FivettGen_Hsvs(shell.Task["FivettGen_Hsvs.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py b/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py index babf203..208e2cf 100644 --- a/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py +++ b/pydra/tasks/mrtrix3/v3_1/labelsgmfirst.py @@ -103,7 +103,7 @@ class LabelSgmfirst(shell.Task["LabelSgmfirst.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/mask2glass.py b/pydra/tasks/mrtrix3/v3_1/mask2glass.py index b8f5399..50a96a7 100644 --- a/pydra/tasks/mrtrix3/v3_1/mask2glass.py +++ b/pydra/tasks/mrtrix3/v3_1/mask2glass.py @@ -87,7 +87,7 @@ class Mask2Glass(shell.Task["Mask2Glass.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py b/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py index 4f09eed..6a2e4e3 100644 --- a/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py +++ b/pydra/tasks/mrtrix3/v3_1/mrtrix_cleanup.py @@ -87,7 +87,7 @@ class MrTrix_Cleanup(shell.Task["MrTrix_Cleanup.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/population_template.py b/pydra/tasks/mrtrix3/v3_1/population_template.py index b573c5a..4b54289 100644 --- a/pydra/tasks/mrtrix3/v3_1/population_template.py +++ b/pydra/tasks/mrtrix3/v3_1/population_template.py @@ -250,7 +250,7 @@ class PopulationTemplate(shell.Task["PopulationTemplate.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None, diff --git a/pydra/tasks/mrtrix3/v3_1/responsemean.py b/pydra/tasks/mrtrix3/v3_1/responsemean.py index 544f495..08f1a84 100644 --- a/pydra/tasks/mrtrix3/v3_1/responsemean.py +++ b/pydra/tasks/mrtrix3/v3_1/responsemean.py @@ -87,7 +87,7 @@ class ResponseMean(shell.Task["ResponseMean.Outputs"]): argstr="-nthreads", default=None, ) - config: MultiInputObj[MultiInputObj] = shell.arg( + config: MultiInputObj[MultiInputObj] | None = shell.arg( help="temporarily set the value of an MRtrix config file entry.", argstr="-config", default=None,