-
Notifications
You must be signed in to change notification settings - Fork 34
Open
Labels
Description
summarizing nvictus/pybbi#25:
proposal to add two functions to https://github.com/open2c/bioframe/tree/main/bioframe/sandbox, perhaps in a new bigwig_extras.py
:
- generate a matrix of [n_intervals x nbins] with binned ChIP signal across each of the intervals in an interval_df (then often visualized as a heatmap)
- generate a vector of [n_intervals x 1 bins] of total ChIP signal across each interval and return a column (also have a kwarg append=False)