add lightbox and description for protein motif prediction project #16

	name: Deploy to GitHub Pages

	# This workflow is adapted from:
	# https://github.com/getpelican/pelican/blob/master/.github/workflows/github_pages.yml

	on:
	push:
	branches: ["master"]
	workflow_dispatch:

	permissions:
	contents: read
	pages: write
	id-token: write

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- name: Checkout code
	uses: actions/checkout@v4

	- name: Set up Python
	uses: actions/setup-python@v5
	with:
	python-version: "3.12"

	- name: Checkout custom theme
	run: git clone https://github.com/pemo-ml/mywilson.git .theme

	- name: Install Pelican
	run: pip install pelican markdown pelican-render-math pelican-metadataparsing

	- name: Build site with Pelican
	run: \|
	pelican content --settings publishconf.py --theme .theme

	- name: Run custom redirect script
	run: python replace_index_with_redirect.py

	- name: Check generated output structure
	run: find output

	- name: Create CNAME file
	run: echo "petermortimer.de" > output/CNAME

	- name: Fix permissions
	run: \|
	chmod -c -R +rX output \| while read line; do
	echo "::warning title=Invalid file permissions automatically fixed::$line"
	done

	- name: Debug output folder contents
	run: ls -lah output && cat output/index.html \|\| echo "index.html not found"

	- name: Upload site artifact
	uses: actions/upload-pages-artifact@v3
	with:
	path: output



	deploy:
	needs: build
	runs-on: ubuntu-latest
	environment:
	name: github-pages
	url: ${{ steps.deployment.outputs.page_url }}
	concurrency:
	group: "pages"
	cancel-in-progress: false
	steps:
	- name: Deploy to GitHub Pages
	id: deployment
	uses: actions/deploy-pages@v4

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