Fix install bug + ruff

Author: gbg141

modules/data/utils/utils.py

@@ -843,7 +843,7 @@ def load_contact_primary_school(cfg: dict, data_dir: str):
     import gdown
 
     url = "https://drive.google.com/uc?id=1H7PGDPvjCyxbogUqw17YgzMc_GHLjbZA"
-    fn = tempfile.NamedTemporaryFile()
+    fn = tempfile.NamedTemporaryFile()  # noqa: SIM115, RUF100
     gdown.download(url, fn.name, quiet=False)
     archive = zipfile.ZipFile(fn.name, "r")
     labels = archive.open(
@@ -912,7 +912,7 @@ def load_senate_committee(
     import gdown
 
     url = "https://drive.google.com/uc?id=17ZRVwki_x_C_DlOAea5dPBO7Q4SRTRRw"
-    fn = tempfile.NamedTemporaryFile()
+    fn = tempfile.NamedTemporaryFile()  # noqa: SIM115, RUF100
     gdown.download(url, fn.name, quiet=False)
     archive = zipfile.ZipFile(fn.name, "r")
     labels = archive.open(

pyproject.toml

@@ -48,9 +48,9 @@ dependencies=[
     "rdkit",
     "omegaconf",
     "pyflagsercount",
+    "hirola",
     "toponetx @ git+https://github.com/pyt-team/TopoNetX.git",
     "topomodelx @ git+https://github.com/pyt-team/TopoModelX.git",
-    "hirola",
 ]
 
 [project.optional-dependencies]

requirements.txt

@@ -18,7 +18,6 @@ celluloid==0.2.0
 certifi==2024.7.4
 cffi==1.16.0
 cfgv==3.4.0
--e git+ssh://git@github.com/peekxc/challenge-icml-2024.git@d9500f7756b5a5786da9f03aa822a0e8e41187ed#egg=challenge_icml_2024
 charset-normalizer==3.3.2
 cmake==3.30.0
 comm==0.2.2
@@ -42,7 +41,6 @@ fsspec==2024.6.1
 gensim==4.3.2
 gudhi==3.10.1
 h11==0.14.0
--e git+ssh://git@github.com/peekxc/HeatLift.git@99b292157b680cc247f10267e72210ba01a1b49b#egg=heatlift
 hirola==0.3.0
 httpcore==1.0.5
 httpx==0.27.0
@@ -197,7 +195,6 @@ terminado==0.18.1
 texttable==1.7.0
 threadpoolctl==3.5.0
 tinycss2==1.3.0
-TopoEmbedX @ git+https://github.com/pyt-team/TopoEmbedX.git@7fe74c9e92dc16a37ab05db36f67aad48c69d10a
 TopoModelX @ git+https://github.com/pyt-team/TopoModelX.git@04d94377c07960daf60fd609c834bb9f1926d0ad
 TopoNetX @ git+https://github.com/pyt-team/TopoNetX.git@a78cd6a6c64acd6bcf13c7885ee37471d76abfea
 torch==2.0.1