Awaiting Summer

Added

• Provide new classes that describe incoming MaxQuant data structure #237
• Provide dedicated data structure `life.qbic.datamodel.datasets.MaxQuantRunResult.groovy`` for grouping maxQuant run data structure #239
• Introduce Json schema maxquant-result-set.schema for validating a provided maxQuant dataset #238
• Introduce life.qbic.datamodel.maxquant.MaxQuantOutput.groovy that provides access to the maxQuant JSON schema #238
• Add MaxQuant Dataset Information to the Readme #241
• Provide overviews in Readme and link javadocs #230

Fixed

• Override equals() for life.qbic.datamodel.dtos.projectmanagement.Project and life.qbic.datamodel.dtos.projectmanagement.ProjectIdentifier #236

Dependencies

• Replace life.qbic.datamodel.datasets.datastructure.files.nfcore.SampleIds.groovy with life.qbic.datamodel.datasets.datastructure.files.general.SampleIds.groovy #239

Deprecated

Cloudy July

2.9.0 (2021-07-06)

Added

• A new class life.qbic.datamodel.dtos.portal.PortalUser that represents a user within QBiC's data management platform. ( #229)

Fixed

Dependencies

Deprecated

Hotfix

2.8.2 (2021-06-15)

Added

• Add new product unit type PER_BATCH("Batch") to life.qbic.datamodel.dtos.business.services.ProductUnit (#223)

Fixed

Dependencies

Deprecated

Patch Release 2.8.1

2.8.1 (2021-06-14)

Added

• Add new product unit type PER_FLOW_CELL("Flow Cell") to life.qbic.datamodel.dtos.business.services.ProductUnit (#221)

Fixed

Dependencies

Deprecated

Marvelous Monday

2.8.0 (2021-05-21)

Added

• Add new product unit types to life.qbic.datamodel.dtos.business.services.ProductUnit (#215)

  • PER_HOUR("Hour"),
  • PER_PROJECT("Project"),
  • PER_RUN("Run"),
  • PER_CYCLE("Cycle"),
  • PER_GEL("Gel/HpH"),
  • PER_10_MG("10 milligram"),
  • PER_MEASUREMENT("Measurement"),
  • PER_CHANNEL("Channel"),
  • PER_100_MICROGRAM_PEPTIDE_CHANNEL("100 microgram peptides channel"),
  • PER_500_ML("500 milliliter"),
  • PER_COMPARISON("Comparison")

Fixed

Dependencies

Deprecated

Furn Friday

2.7.0 (2021-05-21)

Added

• Make life.qbic.datamodel.dtos.business.ProductId comparable (#211)

• Add file extensions to names in Json examples (#204)

Fixed

• Remove @CompileStatic annotation from ProductId to enable builder pattern usage during compilation (#186)

• Unspecified files will be ignored while creating the NfCorePipelineResult Object (#212)

Dependencies

Deprecated

Awaiting Holiday

Fixed

• add missing leading slash to ProductId.toString() method (#207)

New Moon

2.6.0 (2021-05-10)

Added

• Add json schema and wrapper for imaging data life.qbic.datamodel.datasets.imaging.ImageMetadata (#199)

• Provide new classes that describe incoming nf-core bioinformatic pipeline data structures and contains it in a dedicated NfCorePipelineResult class (#198)

Fixed

Dependencies

Deprecated

Sunny Monday

2.5.0 (2021-04-26)

Added

• New constructor using the new life.qbic.datamodel.dtos.business.ProductId constructor for life.qbic.datamodel.dtos.business.services.Sequencing, life.qbic.datamodel.dtos.business.services.SecondaryAnalysis,
  life.qbic.datamodel.dtos.business.services.ProteomicAnalysis, life.qbic.datamodel.dtos.business.services.ProjectManagement, life.qbic.datamodel.dtos.business.services.PrimaryAnalysis,
  life.qbic.datamodel.dtos.business.services.MetabolomicAnalysis, life.qbic.datamodel.dtos.business.services.DataStorage

• Add Tests for life.qbic.datamodel.dtos.business.services.ProductUnitFactory#getForString(java.lang.String) (#190 <https://github.com/qbicsoftware/data-model-lib/pull/190>_)

• New EnumFactory life.qbic.datamodel.dtos.business.ProductCategoryFactory (#192 <https://github.com/qbicsoftware/data-model-lib/pull/192>_)

• New property experimentalDesign for life.qbic.datamodel.dtos.business.Offer

• Introduce new Enum life.qbic.datamodel.dtos.business.AffiliationLabel and new EnumFactory life.qbic.datamodel.dtos.business.AffiliationLabelFactory (#194 <https://github.com/qbicsoftware/data-model-lib/pull/194>_)

Fixed

• Override equals() method for life.qbic.datamodel.dtos.business.OfferId and
  life.qbic.datamodel.dtos.business.TomatoId properly

• Override equals() method for life.qbic.datamodel.dtos.business.ProductId properly

Dependencies

Deprecated

• Constructor using the deprecated life.qbic.datamodel.dtos.business.ProductId constructor for life.qbic.datamodel.dtos.business.services.Sequencing, life.qbic.datamodel.dtos.business.services.SecondaryAnalysis,
  life.qbic.datamodel.dtos.business.services.ProteomicAnalysis, life.qbic.datamodel.dtos.business.services.ProjectManagement, life.qbic.datamodel.dtos.business.services.PrimaryAnalysis,
  life.qbic.datamodel.dtos.business.services.MetabolomicAnalysis, life.qbic.datamodel.dtos.business.services.DataStorage
• Removed Deprecation for life.qbic.datamodel.people.*

Sweet Thursday

2.4.0 (2021-03-18)

Added

• Added life.qbic.datamodel.samples.Status.SAMPLE_RECEIVED, life.qbic.datamodel.samples.Status.LIBRARY_PREP_FINISHED, life.qbic.datamodel.samples.Status.DATA_AVAILABLE sample statuses (#177)
• Added schema for sample entity codes (species/patient level) to life.qbic.datamodel.identifiers.SampleCodeFunctions (#180)
• Added optional property associatedProject to life.qbic.datamodel.dtos.business.Offer (#179)
• Added life.qbic.datamodel.dtos.business.ProductCategory.PROTEOMIC, life.qbic.datamodel.dtos.business.ProductCategory.METABOLOMIC product categories (#181)
• Added life.qbic.datamodel.dtos.business.services.ProductType.PROTEOMIC, life.qbic.datamodel.dtos.business.services.ProductType.METABOLOMIC product types (#181)
• Introduce life.qbic.datamodel.dtos.business.services.ProteomicAnalysis, life.qbic.datamodel.dtos.business.services.MetabolomicAnalysis atomic products (#181)

Fixed

• Equals method is now properly overridden for life.qbic.datamodel.dtos.business.ProductId (#182)

• Correctly name and use respective sample code schemata for codes with check digits and entity codes (e.g. QABCDENTITY-2)
  (#180)

Dependencies

Deprecated

• Deprecated life.qbic.datamodel.identifiers.SampleCodeFunctions#QBIC_SAMPLE_ID_SCHEMA, please use life.qbic.datamodel.identifiers.SampleCodeFunctions#QBIC_SAMPLE_BARCODE_SCHEMA (#180)
• Deprecated life.qbic.datamodel.samples.Status.DATA_AT_QBIC, please use life.qbic.datamodel.samples.Status.DATA_AVAILABLE
  (#180)