Merge pull request #73 from NCKU-QFort/settings

Several Settings

Author: ytdHuang

.github/workflows/FormatCheck.yml

@@ -4,11 +4,17 @@ on:
   push:
     branches:
       - 'main'
-    tags: 
-      - '*'
+    paths:
+      - '.github/workflows/FormatCheck.yml'
+      - '.JuliaFormatter.toml'
+      - '**.jl'
   pull_request:
     branches:
       - 'main'
+    paths:
+      - '.github/workflows/FormatCheck.yml'
+      - '.JuliaFormatter.toml'
+      - '**.jl'
     types:
       - opened
       - reopened

.github/workflows/Runtests.yml

@@ -4,15 +4,21 @@ on:
   push:
     branches:
       - 'main'
-    paths-ignore:
-      - 'docs/**'
-      - 'examples/**'
+    paths:
+      - '.github/workflows/Runtests.yml'
+      - 'src/**'
+      - 'ext/**'
+      - 'test/**'
+      - 'Project.toml'
   pull_request:
     branches:
       - 'main'
-    paths-ignore:
-      - 'docs/**'
-      - 'examples/**'
+    paths:
+      - '.github/workflows/Runtests.yml'
+      - 'src/**'
+      - 'ext/**'
+      - 'test/**'
+      - 'Project.toml'
     types:
       - opened
       - reopened

.github/workflows/documentation.yml

@@ -9,6 +9,13 @@ on:
   pull_request:
     branches:
       - 'main'
+    paths:
+      - '.github/workflows/documentation.yml'
+      - 'src/**'
+      - 'ext/**'
+      - 'docs/**'
+      - 'examples/**'
+      - 'Project.toml'
     types:
       - opened
       - reopened

.gitignore

@@ -1,14 +1,19 @@
 .DS_Store
 .vscode
 
+*.jl.*.cov
+*.jl.cov
+*.jl.mem
 Manifest.toml
 docs/build/
 docs/src/examples/
 
 *.txt
 *.jld2
+*.json
 
 *.py
+*.ipynb
 *.ipynb_checkpoints
 **/*.ipynb_checkpoints
 **/**/*.ipynb_checkpoints

CODE_OF_CONDUCT.md

@@ -0,0 +1,25 @@
+# Contributor Covenant Code of Conduct
+
+As contributors and maintainers of this project, and in the interest of fostering an open and welcoming community, we pledge to respect all people who contribute through reporting issues, posting feature requests, updating documentation, submitting pull requests or patches, and other activities.
+
+We are committed to making participation in this project a harassment-free experience for everyone, regardless of level of experience, gender, gender identity and expression, sexual orientation, disability, personal appearance, body size, race, ethnicity, age, religion, or nationality.
+
+Examples of unacceptable behavior by participants include:
+
+* The use of sexualized language or imagery
+* Personal attacks
+* Trolling or insulting/derogatory comments
+* Public or private harassment
+* Publishing other's private information, such as physical or electronic addresses, without explicit permission
+* Other unethical or unprofessional conduct
+
+Project maintainers have the right and responsibility to remove, edit, or reject comments, commits, code, wiki edits, issues, and other contributions that are not aligned to this Code of Conduct. By adopting this Code of Conduct, project maintainers commit themselves to fairly and consistently applying these principles to every aspect of managing this project. Project maintainers who do not follow or enforce the Code of Conduct may be permanently removed from the project team.
+
+This code of conduct applies both within project spaces and in public spaces when an individual is representing the project or its community. 
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be reported by opening an issue or contacting one or more of the project maintainers. 
+
+This Code of Conduct is adapted from the Contributor Covenant , version 1.2.0, available at https://www.contributor-covenant.org/version/1/2/0/code-of-conduct.html 
+
+[homepage]: https://contributor-covenant.org
+[version]: https://contributor-covenant.org/version/1/2/

Project.toml

@@ -30,11 +30,11 @@ HierarchicalEOM_QuantumToolboxExt = "QuantumToolbox"
 [compat]
 CUDA = "5"
 DiffEqCallbacks = "2, 3"
-FastExpm = "1.1.0"
-JLD2 = "0.4.31"
+FastExpm = "1.1"
+JLD2 = "0.4.31 - 0.4"
 LinearAlgebra = "<0.0.1, 1"
-LinearSolve = "2.4.2"
-OrdinaryDiffEq = "6.53.4"
+LinearSolve = "2.4.2 - 2"
+OrdinaryDiffEq = "6.53.4 - 6"
 Pkg = "<0.0.1, 1"
 PrecompileTools = "1"
 ProgressMeter = "1.7"

docs/Project.toml

@@ -13,12 +13,12 @@ QuantumToolbox = "6c2fb7c5-b903-41d2-bc5e-5a7c320b9fab"
 
 [compat]
 BenchmarkTools = "1.3"
-Documenter = "0.27, 1"
+Documenter = "1"
 HierarchicalEOM = "1"
 LaTeXStrings = "1"
-LinearSolve = "2.4"
+LinearSolve = "2"
 Literate = "2"
-OrdinaryDiffEq = "6.53"
+OrdinaryDiffEq = "6"
 Pardiso = "0.5"
 Plots = "1"
 QuantumOptics = "1"

examples/benchmark_LS_solvers.jl

@@ -42,9 +42,6 @@ UMFPACKFactorization();
 # This solver performs better when there is less structure to the sparsity pattern (depends on the complexity of your system and baths).
 KLUFactorization();
 
-# ### Julia's built-in LU factorization
-LUFactorization();
-
 # ### A generic BICGSTAB implementation from Krylov
 KrylovJL_BICGSTAB();
 
@@ -65,9 +62,6 @@ MKLPardisoIterate();
 # ### KLUFactorization
 @benchmark SteadyState(M_even; solver = KLUFactorization(), verbose = false)
 
-# ### Julia's built-in generic LU factorization
-@benchmark SteadyState(M_even; solver = LUFactorization(), verbose = false)
-
 # ### KrylovJL_BICGSTAB
 @benchmark SteadyState(M_even; solver = KrylovJL_BICGSTAB(rtol = 1e-10, atol = 1e-12), verbose = false)
 
@@ -84,9 +78,6 @@ MKLPardisoIterate();
 # ### KLUFactorization
 @benchmark DensityOfStates(M_odd, ados_s, d_up, ωlist; solver = KLUFactorization(), verbose = false)
 
-# ### Julia's built-in LU factorization
-@benchmark DensityOfStates(M_odd, ados_s, d_up, ωlist; solver = LUFactorization(), verbose = false)
-
 # ### KrylovJL_BICGSTAB
 @benchmark DensityOfStates(
     M_odd,