diff --git a/.github/_project-dependabot.yml b/.github/_project-dependabot.yml
deleted file mode 100644
index 6ed6e57..0000000
--- a/.github/_project-dependabot.yml
+++ /dev/null
@@ -1,12 +0,0 @@
-version: 2
-updates:
-  - package-ecosystem: pip
-    directory: /
-    schedule:
-      interval: monthly
-    versioning-strategy: increase-if-necessary
-    commit-message:
-      prefix: build
-      include: scope
-    assignees:
-      - "lwjohnst86"
diff --git a/.github/sync.yml b/.github/sync.yml
deleted file mode 100644
index fe133dd..0000000
--- a/.github/sync.yml
+++ /dev/null
@@ -1,46 +0,0 @@
-group:
-  - files:
-      # General
-      - source: .github/CODEOWNERS
-        dest: .github/CODEOWNERS
-      - source: .pre-commit-config.yaml
-        dest: .pre-commit-config.yaml
-      - source: .editorconfig
-        dest: .editorconfig
-      - source: .gitignore
-        dest: .gitignore
-      - source: justfile
-        dest: justfile
-      - source: .cz.toml
-        dest: .cz.toml
-      - source: pytest.ini
-        dest: pytest.ini
-      - source: ruff.toml
-        dest: ruff.toml
-      - source: LICENSE.md
-        dest: LICENSE.md
-      - source: .github/pull_request_template.md
-        dest: .github/pull_request_template.md
-      - source: mypy.ini
-        dest: mypy.ini
-
-      # Actions
-      - source: .github/workflows/add-to-project.yml
-        dest: .github/workflows/add-to-project.yml
-      - source: .github/workflows/build-package.yml
-        dest: .github/workflows/build-package.yml
-      - source: .github/workflows/build-website.yml
-        dest: .github/workflows/build-website.yml
-      - source: .github/workflows/release-package.yml
-        dest: .github/workflows/release-package.yml
-      - source: .github/workflows/scorecards.yml
-        dest: .github/workflows/scorecards.yml
-      - source: .github/_project-dependabot.yml
-        dest: .github/dependabot.yml
-
-      # VSCode Settings
-      - source: .vscode/
-        dest: .vscode/
-        deleteOrphaned: true
-    repos: |
-      seedcase-project/seedcase-sprout
diff --git a/.github/workflows/build-package.yml b/.github/workflows/build-package.yml
deleted file mode 100644
index 1f8741e..0000000
--- a/.github/workflows/build-package.yml
+++ /dev/null
@@ -1,19 +0,0 @@
-name: Build package
-
-on:
-  pull_request:
-    branches:
-      - main
-  push:
-    branches:
-      - main
-
-# Limit token permissions for security
-permissions: read-all
-
-jobs:
-  build:
-    uses: seedcase-project/.github/.github/workflows/reusable-build-python.yml@main
-    # Permissions needed for pushing to the coverage branch.
-    permissions:
-      contents: write
diff --git a/.github/workflows/release-package.yml b/.github/workflows/release-package.yml
deleted file mode 100644
index 2e50423..0000000
--- a/.github/workflows/release-package.yml
+++ /dev/null
@@ -1,61 +0,0 @@
-name: Release package
-
-on:
-  push:
-    branches:
-      - main
-
-# Limit token permissions for security
-permissions: read-all
-
-jobs:
-  release:
-    # This job outputs env variables `previous_version` and `current_version`.
-    # Only give permissions for this job.
-    permissions:
-      contents: write
-    uses: seedcase-project/.github/.github/workflows/reusable-release-project.yml@main
-    with:
-      app-id: ${{ vars.UPDATE_VERSION_APP_ID }}
-    secrets:
-      update-version-gh-token: ${{ secrets.UPDATE_VERSION_TOKEN }}
-
-  pypi-publish:
-    name: Publish to PyPI
-    runs-on: ubuntu-latest
-    # Only give permissions for this job.
-    permissions:
-      # IMPORTANT: mandatory for trusted publishing.
-      id-token: write
-    environment:
-      name: pypi
-    needs:
-      - release
-    if: ${{ needs.release.outputs.previous_version != needs.release.outputs.current_version }}
-    steps:
-      - name: Harden the runner (Audit all outbound calls)
-        uses: step-security/harden-runner@ec9f2d5744a09debf3a187a3f4f675c53b671911 # v2.13.0
-        with:
-          egress-policy: audit
-
-      - name: Checkout
-        uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-        with:
-          # Need to explicitly get the current version, otherwise it defaults to current commit
-          # (which is not the same as the release/version commit).
-          ref: ${{ needs.release.outputs.current_version }}
-
-      # This workflow and the publish workflows are based on:
-      # - https://packaging.python.org/en/latest/guides/publishing-package-distribution-releases-using-github-actions-ci-cd-workflows/
-      # - https://www.andrlik.org/dispatches/til-use-uv-for-build-and-publish-github-actions/
-      # - https://github.com/astral-sh/trusted-publishing-examples
-      - name: Set up uv
-        uses: astral-sh/setup-uv@e92bafb6253dcd438e0484186d7669ea7a8ca1cc # v6.4.3
-
-      - name: Build distributions
-        # Builds dists from source and stores them in the dist/ directory.
-        run: uv build
-
-      - name: Publish 📦 to PyPI
-        # Only publish if the option is explicitly set in the calling workflow.
-        run: uv publish --trusted-publishing always
diff --git a/.github/workflows/release-project.yml b/.github/workflows/release-project.yml
new file mode 100644
index 0000000..75d255b
--- /dev/null
+++ b/.github/workflows/release-project.yml
@@ -0,0 +1,21 @@
+name: Release project
+
+on:
+  push:
+    branches:
+      - main
+
+# Limit token permissions for security
+permissions: read-all
+
+jobs:
+  release:
+    # This job outputs env variables `previous_version` and `current_version`.
+    # Only give permissions for this job.
+    permissions:
+      contents: write
+    uses: seedcase-project/.github/.github/workflows/reusable-release-project.yml@main
+    with:
+      app-id: ${{ vars.UPDATE_VERSION_APP_ID }}
+    secrets:
+      update-version-gh-token: ${{ secrets.UPDATE_VERSION_TOKEN }}
diff --git a/.github/workflows/scorecards.yml b/.github/workflows/scorecards.yml
deleted file mode 100644
index 68827d2..0000000
--- a/.github/workflows/scorecards.yml
+++ /dev/null
@@ -1,28 +0,0 @@
-# This workflow uses actions that are not certified by GitHub. They are provided
-# by a third-party and are governed by separate terms of service, privacy
-# policy, and support documentation.
-name: "Security: Scorecard"
-on:
-  # For Branch-Protection check. Only the default branch is supported. See
-  # https://github.com/ossf/scorecard/blob/main/docs/checks.md#branch-protection
-  branch_protection_rule:
-  # To guarantee Maintained check is occasionally updated. See
-  # https://github.com/ossf/scorecard/blob/main/docs/checks.md#maintained
-  schedule:
-    - cron: '20 7 * * 2'
-  push:
-    branches:
-      - main
-
-# Declare default permissions as read only.
-permissions: read-all
-
-jobs:
-  analysis:
-    name: Analysis
-    uses: seedcase-project/.github/.github/workflows/reusable-scorecards.yml@main
-    permissions:
-      # Needed to upload the results to code-scanning dashboard.
-      security-events: write
-      # Needed to publish results and get a badge (see publish_results below).
-      id-token: write
diff --git a/.github/workflows/sync-files.yml b/.github/workflows/sync-files.yml
deleted file mode 100644
index 04d93ca..0000000
--- a/.github/workflows/sync-files.yml
+++ /dev/null
@@ -1,17 +0,0 @@
-name: Sync files across repos
-on:
-  push:
-    branches:
-      - main
-  workflow_dispatch:
-
-# Limit token permissions for security
-permissions: read-all
-
-jobs:
-  sync:
-    uses: seedcase-project/.github/.github/workflows/reusable-sync-files.yml@main
-    with:
-      app-id: ${{ vars.SYNC_FILES_APP_ID }}
-    secrets:
-      sync-files-token: ${{ secrets.SYNC_FILES_TOKEN }}
diff --git a/.python-version b/.python-version
deleted file mode 100644
index e4fba21..0000000
--- a/.python-version
+++ /dev/null
@@ -1 +0,0 @@
-3.12
diff --git a/.vscode/google-notypes.mustache b/.vscode/google-notypes.mustache
deleted file mode 100644
index 55477fa..0000000
--- a/.vscode/google-notypes.mustache
+++ /dev/null
@@ -1,41 +0,0 @@
-{{! Copied from https://github.com/NilsJPWerner/autoDocstring/blob/master/src/docstring/templates/google-notypes.mustache with some edits }}
-{{! Google Docstring Template without Types for Args, Returns or Yields }}
-{{summaryPlaceholder}}.
-
-{{extendedSummaryPlaceholder}}
-{{#parametersExist}}
-
-Args:
-{{#args}}
-    {{var}}: {{descriptionPlaceholder}}.
-{{/args}}
-{{#kwargs}}
-    {{var}}: {{descriptionPlaceholder}}. Defaults to {{&default}}.
-{{/kwargs}}
-{{/parametersExist}}
-{{#returnsExist}}
-
-Returns:
-{{#returns}}
-    {{descriptionPlaceholder}}.
-{{/returns}}
-{{/returnsExist}}
-{{#exceptionsExist}}
-
-Raises:
-{{#exceptions}}
-    {{type}}: {{descriptionPlaceholder}}.
-{{/exceptions}}
-{{/exceptionsExist}}
-{{#yieldsExist}}
-
-Yields:
-{{#yields}}
-    {{descriptionPlaceholder}}.
-{{/yields}}
-{{/yieldsExist}}
-
-Examples:
-    ```{python}
-    {{descriptionPlaceholder}}
-    ```
diff --git a/.vscode/launch.json b/.vscode/launch.json
deleted file mode 100644
index 37af1fd..0000000
--- a/.vscode/launch.json
+++ /dev/null
@@ -1,19 +0,0 @@
-{
-  // Use IntelliSense to learn about possible attributes.
-  // Hover to view descriptions of existing attributes.
-  // For more information, visit: https://go.microsoft.com/fwlink/?linkid=830387
-  "version": "0.2.0",
-  "configurations": [
-    {
-      "name": "test-debugger",
-      "type": "debugpy",
-      "request": "launch",
-      "program": "${file}",
-      "purpose": [
-        "debug-test"
-      ],
-      "console": "integratedTerminal",
-      "justMyCode": false
-    }
-  ]
-}
diff --git a/.vscode/python.code-snippets b/.vscode/python.code-snippets
deleted file mode 100644
index 237cf88..0000000
--- a/.vscode/python.code-snippets
+++ /dev/null
@@ -1,31 +0,0 @@
-{
-  // Place your snippets for python here. Each snippet is defined under a snippet name and has a prefix, body and
-  // description. The prefix is what is used to trigger the snippet and the body will be expanded and inserted. Possible variables are:
-  // $1, $2 for tab stops, $0 for the final cursor position, and ${1:label}, ${2:another} for placeholders. Placeholders with the
-  // same ids are connected.
-  // Example:
-  // "Print to console": {
-  // 	"prefix": "log",
-  // 	"body": [
-  // 		"console.log('$1');",
-  // 		"$2"
-  // 	],
-  // 	"description": "Log output to console"
-  // }
-  "Insert a Python test": {
-    "prefix": "test-gwt",
-    "body": [
-      "def test_$1():",
-      "    # Given",
-      "    $2",
-      "    ",
-      "    # When",
-      "    $3",
-      "    ",
-      "    # Then",
-      "    $4",
-      "",
-    ],
-    "description": "Create Given-When-Then test"
-  }
-}
diff --git a/docs/design/index.qmd b/docs/design/index.qmd
deleted file mode 100644
index e69de29..0000000
diff --git a/docs/guide/index.qmd b/docs/guide/index.qmd
deleted file mode 100644
index e69de29..0000000
diff --git a/docs/includes/_wip.qmd b/docs/includes/_wip.qmd
deleted file mode 100644
index 0e40629..0000000
--- a/docs/includes/_wip.qmd
+++ /dev/null
@@ -1,4 +0,0 @@
-::: {.callout-warning appearance="default" icon="true"}
-🚧 This section is still in active development and is subject to changes
-🚧
-:::
diff --git a/mypy.ini b/mypy.ini
deleted file mode 100644
index f6c48ee..0000000
--- a/mypy.ini
+++ /dev/null
@@ -1,9 +0,0 @@
-[mypy]
-python_version = 3.12
-strict = True
-
-[mypy-quartodoc.*]
-ignore_missing_imports = True
-
-[mypy-tests.*]
-disallow_untyped_defs = False
diff --git a/pyproject.toml b/pyproject.toml
deleted file mode 100644
index 415bf77..0000000
--- a/pyproject.toml
+++ /dev/null
@@ -1,41 +0,0 @@
-[project]
-name = "template-python-package"
-version = "0.1.0"
-description = "Template Python Package"
-authors = [
-  {name = "Luke W. Johnston", email = "lwjohnst@gmail.com" },
-  {name = "Kristiane Beicher", email = "kris.beicher@clin.au.dk" },
-  {name = "Signe Kirk Brødbæk", email = "signekb@clin.au.dk" },
-  {name = "Marton Vago", email = "marton.vago95@gmail.com" },
-]
-maintainers = [
-  {name = "Luke W. Johnston", email = "lwjohnst@gmail.com" },
-  {name = "Kristiane Beicher", email = "kris.beicher@clin.au.dk" },
-  {name = "Signe Kirk Brødbæk", email = "signekb@clin.au.dk" },
-  {name = "Marton Vago", email = "marton.vago95@gmail.com" },
-]
-readme = "README.md"
-license = "MIT"
-license-files = ["LICENSE.md"]
-requires-python = ">=3.12"
-dependencies = []
-
-# TODO: Update these
-[project.urls]
-homepage = "https://PROJECT.seedcase-project.org"
-repository = "https://github.com/seedcase-project/REPO"
-changelog = "https://github.com/seedcase-project/REPO/blob/main/CHANGELOG.md"
-issues = "https://github.com/seedcase-project/REPO/issues"
-
-
-[build-system]
-requires = ["hatchling"]
-build-backend = "hatchling.build"
-
-[tool.pytest.ini_options]
-addopts = [
-  # A short traceback mode to make it easier to view
-  "--tb=short",
-  # Use the `src/` package
-  "--import-mode=importlib",
-]
diff --git a/pytest.ini b/pytest.ini
deleted file mode 100644
index 5b84f15..0000000
--- a/pytest.ini
+++ /dev/null
@@ -1,8 +0,0 @@
-[pytest]
-# - A short traceback (tb) mode to make it easier to view
-# - Use the `src/` package (importlib)
-# - Use code coverage on the `src/` package
-# - If tests fail, do not generate coverage report
-# - Create the coverage report in XML (for badge), terminal, and HTML
-# - Trigger failure if below 90% code coverage
-addopts = --tb=short --import-mode=importlib --cov=src --no-cov-on-fail --cov-report=term --cov-report=xml --cov-report=html --cov-fail-under=90
diff --git a/ruff.toml b/ruff.toml
deleted file mode 100644
index 9171953..0000000
--- a/ruff.toml
+++ /dev/null
@@ -1,26 +0,0 @@
-# Support Python 3.12+
-target-version = "py312"
-
-# In addition to the default formatters/linters, add these as well.
-[lint]
-extend-select = [
-  # Add the `line-too-long` rule to the enforced rule set.
-  "E501",
-  # Add rule that all functions have docstrings.
-  "D",
-  # Add isort to list.
-  "I"
-]
-# Ignore missing docstring at the top of files
-ignore = ["D100"]
-
-[lint.pydocstyle]
-convention = "google"
-
-[format]
-docstring-code-format = true
-
-[lint.per-file-ignores]
-# ignore "Module imported but unused" error in all init files
-"__init__.py" = ["F401"]
-"**/tests/*" = ["D"]
diff --git a/src/PACKAGE-NAME/__init__.py b/src/PACKAGE-NAME/__init__.py
deleted file mode 100644
index e69de29..0000000
diff --git a/tests/__init__.py b/tests/__init__.py
deleted file mode 100644
index 8e07441..0000000
--- a/tests/__init__.py
+++ /dev/null
@@ -1 +0,0 @@
-"""Module containing all tests."""