Merge separate extras into a single one (#753)

* avoid underscore in extras

* switch to single extra extra

---------

Co-authored-by: Ziga Luksic <ziga.luksic@live.com>

Author: Matic Lubej

README.md

@@ -81,8 +81,6 @@ shapely
 fiona
 ```
 
-One of the `[MASK_EXTRA]` dependencies is the `lightgbm` package. On Windows it requires 64 bit Python distribution. If having problems during installation please check [LightGBM installation guide](https://lightgbm.readthedocs.io/en/latest/Installation-Guide.html).
-
 ### PyPI distribution
 
 `eo-learn` is available on PyPI and can be installed with:
@@ -94,16 +92,15 @@ pip install eo-learn
 For some modules there are extra dependencies available, related to specific tasks. These were kept separate in order to keep the `eo-learn` installation light. You can install these with, e.g.:
 
 ```bash
-pip install "eo-learn[MASK_EXTRA]"
+pip install "eo-learn[EXTRA]"
 pip install "eo-learn[VISUALIZATION]"
 ```
 
 The full list (including their descriptions) is available here:
 
 - `RAY` for installing ray and its dependencies
 - `ZARR` for installing the zarr functionality for chunked timestamp saving/loading
-- `FEATURES_EXTRA` for installing interpolation- and clustering-specific dependencies
-- `MASK_EXTRA` for installing `s2cloudless` for cloud masking
+- `EXTRA` for installing interpolation- and clustering-specific dependencies, or for installing `s2cloudless` in cloud masking
 - `VISUALIZATION` for using plotting libraries and utilities
 - `FULL` for installing all dependencies described so far
 - `DOCS` for developers, dependencies for building documentation

eolearn/features/extra/__init__.py

@@ -1,4 +1,4 @@
 """
-A collection of EOTasks with non-standard dependencies. Use the extra `FEATURES_EXTRA` to install dependencies or
+A collection of EOTasks with non-standard dependencies. Use the extra `[EXTRA]` to install dependencies or
 install the module-specific dependencies by hand.
 """

eolearn/mask/extra/__init__.py

@@ -1,4 +1,4 @@
 """
-A collection of EOTasks with non-standard dependencies. Use the extra `MASK_EXTRA` to install dependencies or
+A collection of EOTasks with non-standard dependencies. Use the extra `[EXTRA]` to install dependencies or
 install the module-specific dependencies by hand.
 """

pyproject.toml

@@ -62,11 +62,10 @@ dependencies = [
 
 [project.optional-dependencies]
 
-full = ["eo-learn[RAY,ZARR,FEATURES_EXTRA,MASK_EXTRA,VISUALIZATION]"]
+full = ["eo-learn[RAY,ZARR,EXTRA,VISUALIZATION]"]
 ray = ["ray[default]"]
 zarr = ["s3fs", "zarr"]
-features_extra = ["numba>=0.53.0", "scikit-learn", "scipy"]
-mask_extra = ["s2cloudless"]
+extra = ["numba>=0.53.0", "scikit-learn", "scipy", "s2cloudless"]
 visualization = ["graphviz>=0.10.1", "jinja2", "matplotlib", "pygments"]
 docs = [
     "eo-learn[FULL]",