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bugSomething isn't workingSomething isn't working
Description
Describe the bug
If a model is created without a .stan
file, that is only with an exe_file
, using another fit object (or draws) as an init
fails with an uninformative error message.
To Reproduce
library(cmdstanr)
model_code <- "data {
int N;
array[N] real x;
}
parameters {
real mu;
}
model {
// likelihood including constants
x ~ normal(mu, 1);
}
"
model <- cmdstan_model(write_stan_file(model_code), exe_file = "model_bin")
model_nostanfile <- cmdstan_model(exe_file = "model_bin")
d <- list(x = c(1,2,3,4,5), N = 5)
pth <- model$pathfinder(
data = d
)
# works fine
mcmcfit <- model$sample(
data = d,
init = pth
)
# fails Error: 'init' contains empty lists.
mcmcfit_nostanfile<- model_nostanfile$sample(
data = d,
init = pth
)
Expected behavior
The sampling succeeds, or a more informative error message is given.
Operating system
Linux (Ubuntu 24.04.2)
CmdStanR version number
0.9.0
Additional context
I believe this is due to model_nostanfile$variables()
failing to determine which parameters are in the model, but I think passing all the variable inits without determining which variables are actually in the model should still work
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bugSomething isn't workingSomething isn't working