System overview
| Component | Description |
|---|---|
| terraref.org | Primary website, maintained via Github pages |
| Clowder | Primary user interface |
| Clowder-dev | Development instance |
| BETYdb | Database for experimental context, agronomic management, and trait data |
| BETYdb-dev | Development instance |
| Globus | Primary data transfer and access |
| iRODS | iCommands for data transfer to Cyverse? |
| Globus monitor | Process to monitor status of Globus transfers and ingest data to Clowder |
| Gantry cache monitoring scripts | Scripts to monitor the Gantry cache, validate transfers, produce reports |
| Nagios/checkmk | External monitoring/alert system |
| Extractors | Primary data processing mechanism in compute pipeline |
| CyVerse | External system used to store genetics data? |
| CoGe | Genetics pipeline endpoint |
| ROGER | NSF MRI system with block storage, compute, cloud (openstack), gridftp capabilities |
Clowder is used for the following:
- Metadata storage (primary data stored on filesystem)
- Divice/sensor and calibration data
- Search: 46
- Tool server: 204
- Access control
- API
- Extractor pipeline
- PostGIS/Geostreams API
- Launching batch extractors: 195
BETYdb is used for the following: