the hierfstat package

Testing pleiotropy vs. separate QTL in multiparental populations

Diallel analysis of carrot phenotypes

Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

My Code Collection

Repository for population genetics and quantitative genetics metrics implementarion and visualization

List of papers related to Agricultural Statistics, Plant Breeding, and Quantitative Genetics

Trait Analysis by aSSociation, Evolution and Linkage

Fit a dyadic mixed model to pedigree data estimating (co)variance components and genetic parameters

This repository contains data and code to reproduce analysis in the manuscript, "A mutation in Themis contributes to peanut-induced oral anaphylaxis in CC027 mice"

O objetivo do presente projeto é propor e avaliar o uso da regularização no desempenho de RNAs em modelos de predição genômica (GP). Tal estudo visa melhorar a predição de valores genéticos genômicos (GEBV), evitando o chamado o problema de ‘overfitting’, e estimação de parâmetros genéticos. Para isso, dados simulados e reais serão utilizados.

Version controlled, editable source for the genetic group 'How To': Wolak & Reid (2017) Journal of Animal Ecology, Appendix S6

Supplementary code and data for "The paradox of predictability"

R package for average evolvability measures

Pipeline for comparative transcriptomics across species

Code and analysis pipeline for the paper "Genomic Prediction through Machine Learning and Neural Networks for Traits with Epistasis" (Comput Struct Biotechnol J, 2022).

Analysing patterns of phenotypic adaptation across timescales and lineages

quangpy: a python package for quantitative genetics analysis

A field experiment assessing the adaptive capacity of a wild plant population (Brassica rapa) to expected warming