Search results

Does ScreenPro2 support the analysis of CRISPR knockout (KO) screening experiments?

help wantedExtra attention is neededExtra attention is needed

questionFurther information is requestedFurther information is requested

workflowA workflow for standard screening experimentsA workflow for standard screening experiments

Status: Open.

#106 In ArcInstitute/ScreenPro2;

· victorsanchezarevalo opened on Mar 14, 2025

CLI related bugs

bugSomething isn't workingSomething isn't working

Status: Open.

#96 In ArcInstitute/ScreenPro2;

· abearab opened on Sep 22, 2024

Implement empirical p-value formula by comparing with non-targeting distribution

analysisA data analysis step or taskA data analysis step or task

help wantedExtra attention is neededExtra attention is needed

Status: Open.

#83 In ArcInstitute/ScreenPro2;

· abearab opened on Jul 26, 2024

· 

Benchmark ScreenPro2 in CRISPR screen data analysis tasks

Functions for common QC and phenotype level plots

essentialAn essential featureAn essential feature

good first issueGood for newcomersGood for newcomers

workflowA workflow for standard screening experimentsA workflow for standard screening experiments

Status: Open.

#79 In ArcInstitute/ScreenPro2;

· abearab opened on Jul 17, 2024

· 

Data Visualization Features

Implement methods for nominating synthetic lethal interactions

analysisA data analysis step or taskA data analysis step or task

enhancementNew feature or requestNew feature or request

Status: Open.

#72 In ArcInstitute/ScreenPro2;

· abearab opened on Jul 4, 2024

UMI collapse

analysisA data analysis step or taskA data analysis step or task

enhancementNew feature or requestNew feature or request

Status: Open.

#70 In ArcInstitute/ScreenPro2;

· abearab opened on Jun 25, 2024

· 

Benchmark ScreenPro2 in CRISPR screen data analysis tasks

Functions to build data dashboard and interactive plots

enhancementNew feature or requestNew feature or request

essentialAn essential featureAn essential feature

Status: Open.

#63 In ArcInstitute/ScreenPro2;

· abearab opened on May 23, 2024

· 

Data Visualization Features

Reformat assays objects to be sub-class of <code>AnnData</code> class

dataData for usage within the packageData for usage within the package

enhancementNew feature or requestNew feature or request

Status: Open.

#50 In ArcInstitute/ScreenPro2;

· abearab opened on May 1, 2024

mismatch allowance for sequence counting task

analysisA data analysis step or taskA data analysis step or task

enhancementNew feature or requestNew feature or request

Status: Open.

#47 In ArcInstitute/ScreenPro2;

· abearab opened on Apr 26, 2024

· 

Benchmark ScreenPro2 in CRISPR screen data analysis tasks

Add tutorials

documentationImprovements or additions to documentationImprovements or additions to documentation

enhancementNew feature or requestNew feature or request

Status: Open.

#31 In ArcInstitute/ScreenPro2;

· abearab opened on Jan 27, 2024

Implement methods for phenotype calculation and statistical analysis

analysisA data analysis step or taskA data analysis step or task

enhancementNew feature or requestNew feature or request

good first issueGood for newcomersGood for newcomers

Status: Open.

#12 In ArcInstitute/ScreenPro2;

· abearab opened on Dec 12, 2023

· 

Benchmark ScreenPro2 in CRISPR screen data analysis tasks

Add a section for background and references

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#7 In ArcInstitute/ScreenPro2;

· abearab opened on Dec 11, 2023