ci: Update CI to include new packages, typing and tests #1

	name: geosPythonPackages CI
	on: pull_request

	# Cancels in-progress workflows for a PR when updated
	concurrency:
	group: ${{ github.workflow }}-${{ github.ref }}
	cancel-in-progress: true


	jobs:
	build:

	runs-on: ubuntu-22.04
	strategy:
	fail-fast: false
	max-parallel: 3
	matrix:
	python-version: ["3.9", "3.10", "3.11", "3.12"]
	package-name: ["geos-mesh", "geos-timehistory", "geos-xml-tools", "hdf5-wrapper", "geos-posp", "geos-prep", "geos-trame", "geos-xml-viewer"]

	steps:
	- uses: actions/checkout@v3
	- uses: mpi4py/setup-mpi@v1
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v3
	with:
	python-version: ${{ matrix.python-version }}
	cache: 'pip'
	- name: Install package
	# working-directory: ./${{ matrix.package-name }}
	run: \|
	python -m pip install --upgrade pip
	python -m pip install pytest yapf mypy toml pytest-cov
	python -m pip install ${{ matrix.package-name }}/
	- name: Typing check with mypy
	# working-directory: ./${{ matrix.package-name }}
	run: \|
	python -m mypy ./${{ matrix.package-name }} --namespace-packages --explicit-package-bases --disallow-subclassing-any --ignore-missing-import
	- name: Lint with yapf
	# working-directory: ./${{ matrix.package-name }}
	run: \|
	yapf -r --diff ${{ matrix.package-name }} --style .style.yapf
	- name: Test with pytest
	#working-directory: ./${{ matrix.package-name }}
	run: \|
	python -m pytest ./${{ matrix.package-name }}/tests/ --doctest-modules --junitxml=junit/test-results.xml --cov=com --cov-report=xml --cov-report=html

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