Register, Docker Compose, Fast API#12

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Register, Docker Compose, Fast API#12

Register, Docker Compose, Fast API#12
hosseinjafar wants to merge 23 commits intoImagingDataCommons:mainfrom
engerlab:main

Commits on Jan 20, 2025

added submodule

trying setup a clean docker file and installation script

renamed docker folder

got the image bulding to work. plastimatch command runs on the cli. it is to be tested from inside the python

Commits on Jan 21, 2025

made some slolid progress on the registration. we ge the input now, let's finish calling plastimatch

put down the draft way to call register on plasti match. let's test it now

downloaded the sample data for testing of pyplastimatch

wrote the first test

runnign registration worked for the basic example case

just organized the docker file a bit better

Commits on Jan 22, 2025

wrote a simple api for registration

wrote a bash script to run the api

updated the input model in the api to handle paths to the temp_data

Commits on Jan 23, 2025

added some print statement for the logs!

put a .env file that helps out docker compose with environment variables

Commits on Jan 25, 2025

Update README.md

Commits on Feb 13, 2025

exporing transforms as nrrd

Commits on Feb 26, 2025

made a bunch of changes to work with convert over the api. the changes include:\n 1. replacing _ with - in the inputs for the convert command.\n 2. automatically removing \temp\

simplified the api and tested it over the web. good to go to the next stage

Commits on Mar 3, 2025

very important bug fix. fastapi needs to be run with the run command and not the dev command for the other containers to notice it

Commits on Apr 16, 2025

played with the temp file paths

Commits on Jul 1, 2025

simpler docker i guess

Merge branch 'main' of https://github.com/engerlab/pyplastimatch-brachyutils

Register, Docker Compose, Fast API#12hosseinjafar wants to merge 23 commits intoImagingDataCommons:mainImagingDataCommons/pyplastimatch:mainfrom engerlab:mainengerlab/pyplastimatch-brachyutils:mainCopy head branch name to clipboard

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Commits on Jan 20, 2025

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Commits on Jul 1, 2025

Register, Docker Compose, Fast API#12
hosseinjafar wants to merge 23 commits intoImagingDataCommons:mainfrom
engerlab:main