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@Noble-Lab

Noble Lab Department of Genome Sciences UW

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  1. casanovo casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Python 164 54

  2. cascadia cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Python 25 9

  3. HiCFoundation HiCFoundation Public

    HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

    Python 22 3

  4. FDRBench FDRBench Public

    Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

    Java 20 3

  5. Carafe Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Java 16 3

  6. crema crema Public

    Confidence Estimation for Mass Spectrometry Proteomics

    Python 13 2

Repositories

Showing 10 of 44 repositories
  • casanovo Public

    De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

    Noble-Lab/casanovo’s past year of commit activity
    Python 164 Apache-2.0 54 27 (6 issues need help) 9 Updated Nov 3, 2025
  • Sceptic Public

    Pseudotime analysis for time-series single-cell sequencing and imaging data

    Noble-Lab/Sceptic’s past year of commit activity
    Jupyter Notebook 12 MIT 1 0 0 Updated Nov 2, 2025
  • cascadia Public

    Transformer deep learning model for de novo sequencing of data-independent acquisition mass spectrometry data

    Noble-Lab/cascadia’s past year of commit activity
    Python 25 Apache-2.0 9 7 (1 issue needs help) 2 Updated Oct 31, 2025
  • Carafe Public

    High quality in silico spectral library generation for data-independent acquisition proteomics

    Noble-Lab/Carafe’s past year of commit activity
    Java 16 Apache-2.0 3 4 0 Updated Oct 29, 2025
  • 2025_gmurtaza_loop-qc Public

    All the code to gather QC metrics for chromatin loop data

    Noble-Lab/2025_gmurtaza_loop-qc’s past year of commit activity
    Python 0 0 0 0 Updated Oct 19, 2025
  • nettle Public

    Nettle is an RT imputation method for MS proteomics

    Noble-Lab/nettle’s past year of commit activity
    Python 3 MIT 0 0 0 Updated Oct 14, 2025
  • FDRBench Public

    Estimation of false discovery proportion for mass spectrometry proteomics data using entrapment

    Noble-Lab/FDRBench’s past year of commit activity
    Java 20 Apache-2.0 3 6 0 Updated Oct 8, 2025
  • Noble-Lab/2025_MOHD_hackathon’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Sep 19, 2025
  • glissade Public

    FDR control for mass spectrometry analysis using de novo and database search results

    Noble-Lab/glissade’s past year of commit activity
    Python 1 0 1 0 Updated Sep 12, 2025
  • HiCFoundation Public

    HiCFoundation is a generalizable Hi-C foundation model for chromatin architecture, single-cell and multi-omics analysis across species.

    Noble-Lab/HiCFoundation’s past year of commit activity
    Python 22 Apache-2.0 3 1 0 Updated Aug 23, 2025

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