add some tutorials

.readthedocs.yaml

@@ -0,0 +1,23 @@
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Set the OS, Python version, and other tools you might need
+build:
+  os: ubuntu-20.04
+  tools:
+    python: "3.8"
+
+# Build documentation in the "docs/" directory with Sphinx
+sphinx:
+   configuration: docs/conf.py
+
+# Optionally, but recommended,
+# declare the Python requirements required to build your documentation
+# See https://docs.readthedocs.io/en/stable/guides/reproducible-builds.html
+python:
+   install:
+   - requirements: docs/requirements.txt
+

LICENSE

@@ -1,6 +1,6 @@
 MIT License
 
-Copyright (c) 2025 Min Li's Lab
+Copyright (c) 2025 scLinguist team
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

README.md

@@ -25,8 +25,7 @@ python setup.py install
 * [`zeroshot`](./integration_examples/vertical) 
 * [`fewshot`](./integration_examples/mosaic) 
 * [`imputation `](./imputation_examples/)  -->
-TODO
-We provided detailed tutorials on applying scLinguist to various tasks. Please refer to [https://scLinguist.readthedocs.io/en/latest/](https://scLinguist.readthedocs.io/en/latest/).
+We provided detailed tutorials on applying scLinguist to various tasks. Please refer to [https://scLinguist.readthedocs.io/en/latest/](https://sclinguist.readthedocs.io/en/stable/).
 
 ## Pre-trained model 
 The pre-trained models can be downloaded from these links.

data/README.md

@@ -0,0 +1,11 @@
+# Data used for scLinguist
+| File | Google Drive Link |
+|------|-----------------|
+| ./fewshot_sample_adt.h5ad | [Link](https://drive.google.com/file/d/1iCL8iwZZ2nDZUb9D6L7LWxtZLP4Jbc7o/view?usp=sharing) |
+| ./fewshot_sample_rna.h5ad | [Link](https://drive.google.com/file/d/1P87XOylSWrTE1wqagnV7f4Kjb1p04u_i/view?usp=sharing) |
+| ./test_sample_adt.h5ad | [Link](https://drive.google.com/file/d/18dGKWfLz3vYVS03NcvBQn5mR7oLheXBx/view?usp=sharing) |
+| ./test_sample_rna.h5ad | [Link](https://drive.google.com/file/d/1-AhLZpp6KrKafjs-I1LXwpkzck8O5Fku/view?usp=sharing) |
+| ./train_sample_adt.h5ad | [Link](https://drive.google.com/file/d/1tKuy0ET9zhA_vrkJ04DSVi7lnNUM7Su8/view?usp=sharing) |
+| ./train_sample_rna.h5ad | [Link](https://drive.google.com/file/d/1uVI76zJOLVE0id9j9YAylu11EN35x8UJ/view?usp=sharing) |
+| ./valid_sample_adt.h5ad | [Link](https://drive.google.com/file/d/1tDCgioIGaFJgzzenlR0_iRHjkdfhy75J/view?usp=sharing) |
+| ./valid_sample_rna.h5ad | [Link](https://drive.google.com/file/d/1PufrFTcEijCZXWF-4BgJhKcLJBib-LG4/view?usp=sharing) |

docs/Makefile

@@ -0,0 +1,20 @@
+# Minimal makefile for Sphinx documentation
+#
+
+# You can set these variables from the command line, and also
+# from the environment for the first two.
+SPHINXOPTS    ?=
+SPHINXBUILD   ?= sphinx-build
+SOURCEDIR     = .
+BUILDDIR      = _build
+
+# Put it first so that "make" without argument is like "make help".
+help:
+	@$(SPHINXBUILD) -M help "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)
+
+.PHONY: help Makefile
+
+# Catch-all target: route all unknown targets to Sphinx using the new
+# "make mode" option.  $(O) is meant as a shortcut for $(SPHINXOPTS).
+%: Makefile
+	@$(SPHINXBUILD) -M $@ "$(SOURCEDIR)" "$(BUILDDIR)" $(SPHINXOPTS) $(O)