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11 changes: 11 additions & 0 deletions petab/v2/petab1to2.py
Original file line number Diff line number Diff line change
Expand Up @@ -30,6 +30,17 @@ def petab1to2(

Convert a PEtab problem from PEtab 1.0 to PEtab 2.0 format.

.. note::

Some aspects of PEtab v1 were not well-defined. For example, model
initialization order (e.g., applying initial assignments before or
after condition table overrides) and the impact of compartment size
changes were not specified. In such cases, we made assumptions that are
consistent with the clarified PEtab v2 specifications,
the PEtab test suite, or common practice.
Therefore, it is recommended to carefully review the generated PEtab v2
problem to ensure it aligns with the expected behavior.

:param yaml_config:
The PEtab problem as dictionary or YAML file name.
:param output_dir:
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