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This PR enhances Chapter 1 by improving reproducibility and clarity when plotting sequencing metadata using rpy2 and ggplot2.

Changes include:

  • Explicitly coercing BASE_COUNT and READ_COUNT to numeric types for correct continuous axis plotting.
  • Defining continuous axis scales for proper figure interpretation.
  • Explicitly printing the ggplot object to the R graphics device for consistent figure output.

These changes preserve the original analysis while making the workflow more robust and reproducible.

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