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fixup! WIP
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rnaseq_pipeline/tasks.py

Lines changed: 4 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -484,7 +484,10 @@ def run(self):
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output_dir=self.output().path,
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expect_cells=self.expect_cells,
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force_cells=self.force_cells,
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chemistry=self.chemistry)
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chemistry=self.chemistry,
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# FIXME: request a node with AVX512
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scheduler_extra_args=['--constraint', 'thrd64']
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)
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def output(self):
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return luigi.LocalTarget(join(cfg.OUTPUT_DIR, 'quantified-single-cell', self.experiment_id, self.sample_id))

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